View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1069_low_5 (Length: 734)
Name: NF1069_low_5
Description: NF1069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1069_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 73 - 408
Target Start/End: Complemental strand, 10812295 - 10811970
Alignment:
| Q |
73 |
gagatgaatagcatcatctaccctgaagaaagcaacttcaaagaacacaaaaacaagggatcatcgcttgaaaagggtacaaaacatagcacaaatctag |
172 |
Q |
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| T |
10812295 |
gagaagaatagcatcatctaccctgaagaaagcaacttcaaagaacacaaaaataagggatcatcgcttgaaaagggtacaaaacgtagcacaaatctag |
10812196 |
T |
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| Q |
173 |
ctcaagcacaaaagcttcacaggttgggattctcttacattgcaacatcttttctttacatagtaattaaggttaaagcattttacaatggtttccttgg |
272 |
Q |
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| T |
10812195 |
ctcaagcacaaaagcttcacaggttgggattctcttacattgcaacatcttttctttacatagtaattaaggttaaagaattttacaatggtttccttgg |
10812096 |
T |
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| Q |
273 |
agatgttgctagtgaatcaaggatgatgggaattgatgcaccaatggcagaaccatatttctctgttccagttattccaaattaaccaagtacaaatatt |
372 |
Q |
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| T |
10812095 |
agatgttgctagtgaatcaaggatgatgggaattgatgcaccaatggcagaaccatatttctctgttccagttattccaaatt----------aaataat |
10812006 |
T |
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| Q |
373 |
agaagcaatatcatgcatgattgtaatgtctagtat |
408 |
Q |
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| T |
10812005 |
aggagcaatatcatgcatgattataatgtctagtat |
10811970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 467 - 705
Target Start/End: Complemental strand, 10811915 - 10811676
Alignment:
| Q |
467 |
tagtatcaaatttgaggtgaacttttgtagtaattaattagcacagatttgcttaaatgttccctacttttgtagtaaaattacatatttatgtaatgaa |
566 |
Q |
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| T |
10811915 |
tagtatcaaatttgaggtgaacttttgtagtaattaattagcacagatttgcttaaatgttccctacttttgaagtaaaattacatatttatgtaatgaa |
10811816 |
T |
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| Q |
567 |
gtattgaatgtaatatttaaccaaaatatatattagtgttattttggtgc-------tatacattggtaacnnnnnnnnnnnnnnnngccaaaagctggt |
659 |
Q |
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| T |
10811815 |
gtaatgaatgtaatatttaaacaaa----atattagtaatattttggtgctatattatatacattgataac--ttttttattttgttgccaaaagctggt |
10811722 |
T |
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| Q |
660 |
taacctcaatattgtggctgtttgtgtttagcaaattgcacaactc |
705 |
Q |
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| T |
10811721 |
tcacctcaatattgtggctgtttgtgtttagcaaattgcacaactc |
10811676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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