View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1069_low_6 (Length: 660)
Name: NF1069_low_6
Description: NF1069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1069_low_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 546; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 28 - 581
Target Start/End: Original strand, 1306240 - 1306793
Alignment:
| Q |
28 |
ccatgttcactccatcctaagacaaaagtaacaaccctagaacttaatcagtgaaggactctagtgaaaaaccctagaactcaaaatactcattttcgtc |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1306240 |
ccatgttcactccatcctaagacaaaagtaacaaccctagaacttaatcagtgaaggactccagtgaaaaaccctagaactcaaaatactcattttcgtc |
1306339 |
T |
|
| Q |
128 |
atcaactaaaagaacatgattacatgatgaaaaccctagtaggaaaaaattccgttttttgaactatctctttaatcagcaaccataaatgaatcagcaa |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1306340 |
atcaactaaaagaacatgattacatgatgaaaaccctagtaggaaaaaattccgttttttgaactatctctttaatcagcaaccataaatgaatcagcaa |
1306439 |
T |
|
| Q |
228 |
ttcagcatctccaagatcaacaaccaaatgtttcatatcgtcagtatgttcatcctctggtacatagtaagttgggaaaggaagtatagatgggtcaggt |
327 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1306440 |
ttcagcatctccaagatcaacaaccaaatgtttcatatcctcagtatgttcatcctctggtacatagtaagttgggaaaggaagtatagatgggtcaggt |
1306539 |
T |
|
| Q |
328 |
ttttcgtagactattgcttgagagcttcaatcttagtttagttggtcatgaaaatggtgtgtgataacatttgtagattatgatgtgtttatcattttct |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1306540 |
ttttcgtagactattgcttgagagcttcaatcttagtttagttggtcatgaaaatggtgtgtgataacatttgtagattatgatgtgtttatcattttct |
1306639 |
T |
|
| Q |
428 |
taaaacaaacatataatactgatcttttaatttaattttgaattttaaacctgccatttatatttaactatatatcttaaaaaatatatacaccattgta |
527 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1306640 |
taaaacaaacatataatactgatcttttaatttaattttgaattttaaacctgccatttatatttaactatatatcttaaaaaatatatacaccattgta |
1306739 |
T |
|
| Q |
528 |
aatttcaatgtgagatcatccaagctagatatttgtgtacatgatcattgaatg |
581 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1306740 |
aatttcaatgtgagatcatccaagctagatatttgtgtacatgatcattgaatg |
1306793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 172 - 339
Target Start/End: Original strand, 1310893 - 1311052
Alignment:
| Q |
172 |
aaaaattccgttttttgaactatctctttaatcagcaaccataaatgaatcagcaattcagcatctccaagatcaacaaccaaatgtttcatatcgtcag |
271 |
Q |
| |
|
||||| ||| |||| ||||||||||||||||||| |||||||||||| |||| || |||||||||||| ||| |||| ||| |||||| |||| |
|
|
| T |
1310893 |
aaaaaatccattttatgaactatctctttaatcaacaaccataaatggatcaaca--------tctccaagatcagcaatcaaaggttccatatcatcag |
1310984 |
T |
|
| Q |
272 |
tatgttcatcctctggtacatagtaagttgggaaaggaagtatagatgggtcaggtttttcgtagact |
339 |
Q |
| |
|
||| |||||| ||||| ||| ||||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
1310985 |
tatcttcatcttctggcacaaagtaagttgggaaaggaagtatagatgtgtcaggtttttcatagact |
1311052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 129 - 332
Target Start/End: Original strand, 38479093 - 38479284
Alignment:
| Q |
129 |
tcaactaaaagaacatgattacatgatgaaaaccctagtaggaaaaaattccgttttttgaactatctctttaatcagcaaccataaatgaatcagcaat |
228 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||| || | |||| || |||| |||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
38479093 |
tcaaataaaagaacatgattacatgaagaaaacc----taacacaaaaacccattttctgaactatctctttaatcagtaaccataaatggatc------ |
38479182 |
T |
|
| Q |
229 |
tcagcatctccaagatcaacaaccaaatgtttcatatcgtcagtatgttcatcctctggtacatagtaagttgggaaaggaagtatagatgggtcaggtt |
328 |
Q |
| |
|
|| |||| ||||||||| |||||||| |||||||||| || |||| |||||| ||||| ||| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
38479183 |
-ca-catccccaagatcagcaaccaaaggtttcatatcatctgtatcttcatcttctggcacaaagtaagttgggaaaggaagtatagatgtgtcaggtt |
38479280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 52 - 98
Target Start/End: Original strand, 38478992 - 38479038
Alignment:
| Q |
52 |
aaagtaacaaccctagaacttaatcagtgaaggactctagtgaaaaa |
98 |
Q |
| |
|
||||||| |||||||||| |||| ||||||||||||| ||||||||| |
|
|
| T |
38478992 |
aaagtaaaaaccctagaagttaaccagtgaaggactcaagtgaaaaa |
38479038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 129 - 332
Target Start/End: Original strand, 41905304 - 41905495
Alignment:
| Q |
129 |
tcaactaaaagaacatgattacatgatgaaaaccctagtaggaaaaaattccgttttttgaactatctctttaatcagcaaccataaatgaatcagcaat |
228 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||| ||| | |||| || ||| |||||||||||||| |||||| ||||||||||| ||| |
|
|
| T |
41905304 |
tcaaataaaagaacatgattacatgaagaaaacc----tagcacaaaaacccatttgttgaactatctcttcaatcagtaaccataaatggatc------ |
41905393 |
T |
|
| Q |
229 |
tcagcatctccaagatcaacaaccaaatgtttcatatcgtcagtatgttcatcctctggtacatagtaagttgggaaaggaagtatagatgggtcaggtt |
328 |
Q |
| |
|
|| |||| ||||||||| ||| |||| |||||||||| || || | |||| ||||| ||| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
41905394 |
-ca-catccccaagatcagcaagcaaaggtttcatatcatcttcatctccatcttctggcacaaagtaagttgggaaaggaagtatagatgtgtcaggtt |
41905491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University