View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10700_high_1 (Length: 457)
Name: NF10700_high_1
Description: NF10700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10700_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 44576599 - 44576863
Alignment:
| Q |
1 |
tgaaaataaagagttagatataaaataatttcttaaattaccagaagtgatgcaatacaaccatataggagggtccggaacctgccaagataagtatcag |
100 |
Q |
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| T |
44576599 |
tgaaaataaagagttagatataaaataatttcttaaattaccagaagtgatgcaatacaaccatataggagggtccggaacctcccaagataagtatcag |
44576698 |
T |
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| Q |
101 |
aaatgaaagcaccaaataatgatgcaatgtttgacgatccattccaaatttgcaccacattaaccacaaatatcccactcatgttgtaatttgtcagaag |
200 |
Q |
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| T |
44576699 |
aaatgaaagcaccaactaatgatgcaatgtttgacgatccattccaaatttgcaccacattaaccacaaatatcccactcatgttgtaatttgtcagaag |
44576798 |
T |
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| Q |
201 |
atacactgttagatttgatatcaaactcatcgatgccaatttctcaaatgactcattaccttgat |
265 |
Q |
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| T |
44576799 |
atacactgttagatttgatatcaaactcatcgatgccaatttctcaaatgactcattaccttgat |
44576863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 305 - 441
Target Start/End: Original strand, 44576890 - 44577026
Alignment:
| Q |
305 |
caatgttaagaaatcttgtatgtttgtaacaacattaatgattataattaattaatgtagaaaacatatataccgatgatatatttaacagatctccatc |
404 |
Q |
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| T |
44576890 |
caatgttaagaaatcttgtgtgtttgtaacaacattaatgattataattaattaatgtagaaaacatatataccgatgatatatttaacagatctccatc |
44576989 |
T |
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| Q |
405 |
ctcctgcttctctggatgaagcttcattagatggtat |
441 |
Q |
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| T |
44576990 |
ctcctgcttctctggatgaagcttcattagatggtat |
44577026 |
T |
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