View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10700_high_3 (Length: 421)

Name: NF10700_high_3
Description: NF10700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10700_high_3
NF10700_high_3
[»] chr1 (3 HSPs)
chr1 (9-279)||(52421230-52421490)
chr1 (264-406)||(52421502-52421646)
chr1 (99-142)||(38877680-38877723)
[»] chr5 (1 HSPs)
chr5 (9-125)||(37124372-37124487)
[»] chr3 (1 HSPs)
chr3 (65-142)||(50621707-50621784)
[»] chr8 (2 HSPs)
chr8 (82-142)||(45512843-45512903)
chr8 (84-134)||(9989310-9989360)
[»] chr7 (1 HSPs)
chr7 (83-136)||(41626853-41626906)
[»] chr6 (3 HSPs)
chr6 (94-135)||(2079220-2079261)
chr6 (72-120)||(20834423-20834471)
chr6 (82-142)||(12134248-12134308)
[»] chr4 (4 HSPs)
chr4 (81-142)||(38904066-38904127)
chr4 (94-142)||(29398706-29398754)
chr4 (96-142)||(40933243-40933289)
chr4 (82-135)||(20105825-20105878)
[»] chr2 (2 HSPs)
chr2 (93-142)||(37393514-37393563)
chr2 (96-142)||(28908489-28908535)


Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 9 - 279
Target Start/End: Original strand, 52421230 - 52421490
Alignment:
Q  9 atgaaagtaccactcatgttgaaggagaaattttattgaataactttaagacggataatattgtatgaagtagagtgttggacaatgaagaactaacacg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  52421230 atgaaagtaccactcatgttgaaggagaaattttattgaataactttaagacggacaatgttgtatgaagtagagtgttggacaatgaagaactaacacg 52421329  T
Q  109 agaataaaataagtgtagcgaagatgagaatgttacaaagattggtgaaaataagtagagtttaaatttaatacagttatatgttggagtttagaagtat 208  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||          |    
T  52421330 agaataaaataagtgtagcgaagatgagaatgttacaaaaattggtgaaaataagtagagtttaaatttaatacagttatatgttggag----------t 52421419  T
Q  209 ttaccatttacaaaaaatctttgtagtgaatattagttatatccatcgttgaattatactagaagttgtaa 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52421420 ttaccatttacaaaaaatctttgtagtgaatattagttatatccatcgttgaattatactagaagttgtaa 52421490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 264 - 406
Target Start/End: Original strand, 52421502 - 52421646
Alignment:
Q  264 atactagaagttgtaataacagattttgtttaatatgcgcaaggaaaatagtcttacatcatccacacga--gtgtgtgttttcatccatggatcaataa 361  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  52421502 atactagaagttgtaataacagattttgtttaatacgcgcaaggaaaatagtcttacatcatccacacgagtgtgtgtgttttcatccatggatcaataa 52421601  T
Q  362 atattatcatatcttagttgatcccatgatgcaatttattgattc 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  52421602 atattatcatatcttagttgatcccatgatgcaatttattgattc 52421646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 99 - 142
Target Start/End: Complemental strand, 38877723 - 38877680
Alignment:
Q  99 aactaacacgagaataaaataagtgtagcgaagatgagaatgtt 142  Q
    |||||||||||||||||||||||||||||  ||||||| |||||    
T  38877723 aactaacacgagaataaaataagtgtagcagagatgaggatgtt 38877680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 125
Target Start/End: Original strand, 37124372 - 37124487
Alignment:
Q  9 atgaaagtaccactcatgttgaaggagaaattttattgaataactttaagacggataatattgtatgaagtagagtgttggacaatgaagaactaacacg 108  Q
    |||||||||||||||| ||| |||||||||||| |||| | || | |||||| || ||| || |||||| |||||||||||||  |||||| | ||||||    
T  37124372 atgaaagtaccactcaagttaaaggagaaatttcattggacaagtgtaagaccgacaatgttatatgaa-tagagtgttggacggtgaagacccaacacg 37124470  T
Q  109 agaataaaataagtgta 125  Q
    |||||| ||| ||||||    
T  37124471 agaatacaatcagtgta 37124487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 142
Target Start/End: Complemental strand, 50621784 - 50621707
Alignment:
Q  65 aatattgtatgaagtagagtgttggacaatgaagaactaacacgagaataaaataagtgtagcgaagatgagaatgtt 142  Q
    |||||||| ||||  ||||||||  ||| | ||||||||| ||||| ||||||||||||||||| |||||||||||||    
T  50621784 aatattgtgtgaaacagagtgttcaacagtcaagaactaatacgaggataaaataagtgtagcggagatgagaatgtt 50621707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 82 - 142
Target Start/End: Complemental strand, 45512903 - 45512843
Alignment:
Q  82 agtgttggacaatgaagaactaacacgagaataaaataagtgtagcgaagatgagaatgtt 142  Q
    ||||||||||| |||||||| ||||||| |||||||||||  ||||| |||||||||||||    
T  45512903 agtgttggacattgaagaaccaacacgaaaataaaataagcatagcggagatgagaatgtt 45512843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 134
Target Start/End: Complemental strand, 9989360 - 9989310
Alignment:
Q  84 tgttggacaatgaagaactaacacgagaataaaataagtgtagcgaagatg 134  Q
    ||||||||||||||||||||| | || ||||||||||| |||| |||||||    
T  9989360 tgttggacaatgaagaactaaaatgaaaataaaataagcgtagtgaagatg 9989310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 83 - 136
Target Start/End: Original strand, 41626853 - 41626906
Alignment:
Q  83 gtgttggacaatgaagaactaacacgagaataaaataagtgtagcgaagatgag 136  Q
    ||||| |||||||||||||||||| |||| |||||| ||||||||| |||||||    
T  41626853 gtgtttgacaatgaagaactaacatgagagtaaaattagtgtagcggagatgag 41626906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 2079220 - 2079261
Alignment:
Q  94 tgaagaactaacacgagaataaaataagtgtagcgaagatga 135  Q
    |||||||||||||||||||||||||||| |||||| ||||||    
T  2079220 tgaagaactaacacgagaataaaataagcgtagcggagatga 2079261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 20834471 - 20834423
Alignment:
Q  72 tatgaagtagagtgttggacaatgaagaactaacacgagaataaaataa 120  Q
    |||||| ||||||||||  ||||||||| ||||||||||||||||||||    
T  20834471 tatgaaatagagtgttgagcaatgaagatctaacacgagaataaaataa 20834423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 142
Target Start/End: Complemental strand, 12134308 - 12134248
Alignment:
Q  82 agtgttggacaatgaagaactaacacgagaataaaataagtgtagcgaagatgagaatgtt 142  Q
    |||||||| ||  |||||||||||||||||||||| ||||  ||||  |||||||||||||    
T  12134308 agtgttgggcagcgaagaactaacacgagaataaactaagcatagcagagatgagaatgtt 12134248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 38904127 - 38904066
Alignment:
Q  81 gagtgttggacaatgaagaactaacacgagaataaaataagtgtagcgaagatgagaatgtt 142  Q
    ||||||||| || | || ||| ||||| ||||||||||||||||||| ||||||||||||||    
T  38904127 gagtgttgggcagtaaaaaaccaacacaagaataaaataagtgtagcaaagatgagaatgtt 38904066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 142
Target Start/End: Original strand, 29398706 - 29398754
Alignment:
Q  94 tgaagaactaacacgagaataaaataagtgtagcgaagatgagaatgtt 142  Q
    |||||||| |||| ||||||||||||||||||||| ||||||| |||||    
T  29398706 tgaagaaccaacatgagaataaaataagtgtagcggagatgaggatgtt 29398754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 142
Target Start/End: Complemental strand, 40933289 - 40933243
Alignment:
Q  96 aagaactaacacgagaataaaataagtgtagcgaagatgagaatgtt 142  Q
    |||||| ||||||||| |||||||||||||||| ||||||| |||||    
T  40933289 aagaaccaacacgagagtaaaataagtgtagcgtagatgaggatgtt 40933243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 135
Target Start/End: Complemental strand, 20105878 - 20105825
Alignment:
Q  82 agtgttggacaatgaagaactaacacgagaataaaataagtgtagcgaagatga 135  Q
    ||||||||||| ||||| |||||||| ||||||| |||| ||||||| ||||||    
T  20105878 agtgttggacagtgaaggactaacacaagaataatataaatgtagcggagatga 20105825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 93 - 142
Target Start/End: Complemental strand, 37393563 - 37393514
Alignment:
Q  93 atgaagaactaacacgagaataaaataagtgtagcgaagatgagaatgtt 142  Q
    ||||||||| |||||||||||||||||||||||| ||||| ||| |||||    
T  37393563 atgaagaacaaacacgagaataaaataagtgtagagaagacgaggatgtt 37393514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 142
Target Start/End: Complemental strand, 28908535 - 28908489
Alignment:
Q  96 aagaactaacacgagaataaaataagtgtagcgaagatgagaatgtt 142  Q
    |||||| | ||||||| |||||||||||||||| |||||||||||||    
T  28908535 aagaaccagcacgagagtaaaataagtgtagcggagatgagaatgtt 28908489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University