View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10700_low_1 (Length: 481)
Name: NF10700_low_1
Description: NF10700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10700_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 18 - 473
Target Start/End: Original strand, 32042125 - 32042588
Alignment:
| Q |
18 |
agttgcacatttttggtacaaatatcttttgtagtgtactaaataacggttctcagaagcttattataggctctatgatctatctagtactagttggagg |
117 |
Q |
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| T |
32042125 |
agttgcacatttttggtacaaatatcttttgtagtgtactaaataacggttctcagaagcttattataggctctatgatctatctagtactagttggagg |
32042224 |
T |
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| Q |
118 |
gaaattatattgtaaacattatataatttcattctaactgtnnnnnnnn-ttctgagtcatgtcccacaacttgattccaatgcgaaataatttatatga |
216 |
Q |
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| T |
32042225 |
caaattatattgtaaacattttataatttcattttaactgtaaaaaaaaattctgagtcatgtcccacaacttgattccaatgcgaaataatttatatga |
32042324 |
T |
|
| Q |
217 |
tcattgaaaatttagtataaggttgaaatatgatgcatattgtaaacaaatgaattaatattgttatttgtcttctaagacaaaactcttgagctgagtg |
316 |
Q |
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| T |
32042325 |
tcattgaaaatttagtataaggttgaagcatgatgcatattgtaaacaaattaattaatattgttatttgtcttctaagacaaaactcttgagctgagtg |
32042424 |
T |
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| Q |
317 |
ccaccattgggccc-aaggagttatgtatggtgtgggcacggtcgggaccaaacgatggccttcagaagtag------gactcactacttcggatgttaa |
409 |
Q |
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| T |
32042425 |
ccaccattgggcccaaaggagttatgtatggtgtgggcacggtcgggaccaaacgatggccttcagaagtaggactcagactcactacttcggatgttaa |
32042524 |
T |
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| Q |
410 |
atgcattctatggctgaaagtgaagggaagagaaaactatattgtgtcacacctcattcatctc |
473 |
Q |
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| T |
32042525 |
atgcattctatggctgaaagtgaagggaagagaaaactatattgtgtcacacctcattcatctc |
32042588 |
T |
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