View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10700_low_10 (Length: 296)
Name: NF10700_low_10
Description: NF10700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10700_low_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 30 - 282
Target Start/End: Complemental strand, 14855480 - 14855226
Alignment:
| Q |
30 |
gaggctgcatttgcaacctaatattaataataacaataataatgcaattaacgtgtacaaaaggtggagaatatcaaaacaaaactccacnnnnnnnn-- |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14855480 |
gaggctgcatttgcaacctaatattaataataacaataataatgcaattaacgtgtacaaaaggtggagaatatcaaaacaaaactccacaaaaaaaaaa |
14855381 |
T |
|
| Q |
128 |
taataacacaattactatttatactattaaatacaaatttatacaacaaagtagaaaaacaaataactcagaaccataaacacttgcaacatctgagcta |
227 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14855380 |
taataacacaattactatttataatattaaatacaaatttatacaacaaagtagaaaaacaaataactcagaaccataaacacttgcaacatctgagcta |
14855281 |
T |
|
| Q |
228 |
acatcttgaccaaaccccggcggtgaagaaagatgcgacggctgtacatcaaaac |
282 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14855280 |
acatcttcaccaaaccccggcggtgaagaaagatgcgacggctgtacatcaaaac |
14855226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 33229315 - 33229271
Alignment:
| Q |
48 |
taatattaataataacaataataatgcaattaacgtgtacaaaag |
92 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||| | |||||||| |
|
|
| T |
33229315 |
taataataataataacaataataatgaaattaacatatacaaaag |
33229271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 17916112 - 17916156
Alignment:
| Q |
48 |
taatattaataataacaataataatgcaattaacgtgtacaaaag |
92 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||| | |||||||| |
|
|
| T |
17916112 |
taataataataataacaataataatgaaattaacatatacaaaag |
17916156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 37371509 - 37371465
Alignment:
| Q |
48 |
taatattaataataacaataataatgcaattaacgtgtacaaaag |
92 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||| | |||||||| |
|
|
| T |
37371509 |
taataataataataacaataataatgaaattaacatatacaaaag |
37371465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University