View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10700_low_11 (Length: 289)
Name: NF10700_low_11
Description: NF10700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10700_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 27355012 - 27354760
Alignment:
| Q |
18 |
gaaacgttgttgtcctaccatgcatttaccggtaaaaacaagtttagctttcatttggatcggagtgtaatggttttcttctaactctatcttttcgtga |
117 |
Q |
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| T |
27355012 |
gaaacgttgttgtcctaccatgcatttaccggtaaaaacaagtttagctttcatttggatcggagtgtaatggttttcttctaattctatcttttcgtga |
27354913 |
T |
|
| Q |
118 |
ttctttagtaggacctttggcgagtaaccctggtactgaattggacaaggctgtcaacaagctccgaacgaaataccgttcctatattgtcgaatatgat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
27354912 |
ttctttagtaggacctttggcgagtaaccctggtactgaattggacaaggccgtcaacaagctccgaacgaaataccgttcctatattgtcgaatataat |
27354813 |
T |
|
| Q |
218 |
gttgaggatgtcagtgttaatgtttcgttttacatatccagttcatgcgtttc |
270 |
Q |
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| T |
27354812 |
gttgaggatgtcagtgttaatgtttcgttttacatatccagttcatgtgtttc |
27354760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 276
Target Start/End: Complemental strand, 42996247 - 42995990
Alignment:
| Q |
18 |
gaaacgttgttgtcctaccatgcatttaccggtaaaaacaagtttagctttcatttggatcggagtgtaatggttttcttctaactctatcttttcgtga |
117 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
42996247 |
gaaacgttgttgtcctaccatgcacttaccggtaaaaacaagtttaactttcatt-ggatcggagtgtagtggttttcttctaactttatcttttcgtga |
42996149 |
T |
|
| Q |
118 |
ttctttagtaggacctttggcgagtaaccctggtactgaattggacaaggctgtcaacaagctccgaacgaaataccgttcctatattgtcgaatatgat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||| ||||||||||||||||||||||| |
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| T |
42996148 |
ttctttagtaggacctttggcgagtaaccctggtactgaattggacaagtccgtcaacaagctctgaacgaaatattgttcctatattgtcgaatatgat |
42996049 |
T |
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| Q |
218 |
gttgaggatgtcagtgttaatgtttcgttttacatatccagttcatgcgtttctctgct |
276 |
Q |
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|||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
42996048 |
gttgaggatgtcggtgttaatgtttcgttttacatatcccgttcatgcgtttcactgct |
42995990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 109 - 228
Target Start/End: Complemental strand, 50232597 - 50232478
Alignment:
| Q |
109 |
ttttcgtgattctttagtaggacctttggcgagtaaccctggtactgaattggacaaggctgtcaacaagctccgaacgaaataccgttcctatattgtc |
208 |
Q |
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|||||||| ||||||||| ||| |||||| ||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
50232597 |
ttttcgtgtttctttagttggatctttggtgagtaaccctgctactgaattggacaaagctgtcaacaagctccggacgaaataccgctcctatattgtc |
50232498 |
T |
|
| Q |
209 |
gaatatgatgttgaggatgt |
228 |
Q |
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| T |
50232497 |
gaatatgatgttgaggatgt |
50232478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 91 - 228
Target Start/End: Complemental strand, 21005829 - 21005692
Alignment:
| Q |
91 |
ttttcttctaactctatcttttcgtgattctttagtaggacctttggcgagtaaccctggtactgaattggacaaggctgtcaacaagctccgaacgaaa |
190 |
Q |
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||||||||||||| | |||||||| ||||||||| ||| |||||| ||||||||||| ||||||||||||||| ||||||||||||||||| | |||| |
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| T |
21005829 |
ttttcttctaacttttctttttcgtgtttctttagttggatctttggtgagtaaccctgctactgaattggacaaagctgtcaacaagctccggatgaaa |
21005730 |
T |
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| Q |
191 |
taccgttcctatattgtcgaatatgatgttgaggatgt |
228 |
Q |
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||||| |||||||||||||||||||||||||||||||| |
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| T |
21005729 |
taccgctcctatattgtcgaatatgatgttgaggatgt |
21005692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 52 - 225
Target Start/End: Original strand, 16981510 - 16981690
Alignment:
| Q |
52 |
aaaacaagtttagctttcatttggatcggagtgtaatggttttcttctaactctatcttttcgtgattctttagtaggacctttggcgagtaaccctggt |
151 |
Q |
| |
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||||||||||| |||||||||| ||| || | |||| |||||| |||| ||| | ||| |||| | ||||||||||||||||| | | ||||||| | |
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| T |
16981510 |
aaaacaagttttgctttcattttgattcgaatataattgttttcctctatctcagtttttacgtgttattttagtaggacctttggtgtgcaaccctgtt |
16981609 |
T |
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| Q |
152 |
actgaattggacaaggctgtcaacaagct-------ccgaacgaaataccgttcctatattgtcgaatatgatgttgagga |
225 |
Q |
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||||||||||||||||| || ||||| || ||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
16981610 |
actgaattggacaaggcggtaaacaaactgcgaagcgcgaaccaaataccgttcctatattgttgaatatgatgttgagga |
16981690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 16981457 - 16981509
Alignment:
| Q |
18 |
gaaacgttgttgtcctaccatgcatttaccggtaaaaacaagtttagctttcat |
71 |
Q |
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|||||||||||||||||||||||| | || ||| |||||||||||||||||||| |
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| T |
16981457 |
gaaacgttgttgtcctaccatgcactaactggt-aaaacaagtttagctttcat |
16981509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 225
Target Start/End: Original strand, 39180538 - 39180635
Alignment:
| Q |
128 |
ggacctttggcgagtaaccctggtactgaattggacaaggctgtcaacaagctccgaacgaaataccgttcctatattgtcgaatatgatgttgagga |
225 |
Q |
| |
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|||||||||| |||| | || | |||||||||||||| ||| || |||||||| | || |||||| | ||||||||||| ||||||||||||||||| |
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| T |
39180538 |
ggacctttggtgagtcatccagctactgaattggacagggcggttaacaagctgctgacaaaatacaggtcctatattgttgaatatgatgttgagga |
39180635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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