View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10700_low_12 (Length: 278)
Name: NF10700_low_12
Description: NF10700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10700_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 267
Target Start/End: Original strand, 1161043 - 1161289
Alignment:
| Q |
20 |
gaacaaacttgaaggagagatatctacgatataaacaataaacaaatgaatccctttcaataaaaataagcaatttgatcacgtcatttaagtcactgat |
119 |
Q |
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| T |
1161043 |
gaacaaacttgaaggagagatatctacgatataaacaataaacaaatgaatccctttcaataaaaataagcaatttgatcacgtcatttaagtcactgat |
1161142 |
T |
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| Q |
120 |
tttgctnnnnnnnntatttttacagaattacataagtttatttatggaaattgatacaagttattttctnnnnnnncaag-aagaagtttatttgtggaa |
218 |
Q |
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| T |
1161143 |
tttgctaaaaaaaatatttttacagaattacataagtttatttatggaaattgatacaagttattttctaaaaaa--aagtaagaagtttatttgtggaa |
1161240 |
T |
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| Q |
219 |
aagtcaatgccagtggtcaattgacgtgatttgttaacaatacacctat |
267 |
Q |
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| T |
1161241 |
aagtcaatgccagtggtcaattgacgtgatttgttaacaatacacctat |
1161289 |
T |
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