View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10700_low_14 (Length: 250)

Name: NF10700_low_14
Description: NF10700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10700_low_14
NF10700_low_14
[»] chr4 (1 HSPs)
chr4 (1-242)||(37210945-37211179)
[»] chr6 (5 HSPs)
chr6 (131-180)||(9540594-9540643)
chr6 (46-105)||(29389145-29389204)
chr6 (43-169)||(33240836-33240956)
chr6 (42-106)||(9929362-9929426)
chr6 (131-167)||(18075587-18075623)
[»] chr5 (1 HSPs)
chr5 (141-190)||(32177341-32177390)
[»] chr2 (2 HSPs)
chr2 (143-184)||(5868026-5868067)
chr2 (136-176)||(24166794-24166834)
[»] chr7 (2 HSPs)
chr7 (142-181)||(2391581-2391620)
chr7 (46-105)||(40172484-40172543)
[»] chr1 (1 HSPs)
chr1 (42-105)||(46940016-46940079)
[»] chr8 (2 HSPs)
chr8 (143-177)||(31078737-31078771)
chr8 (51-105)||(40899694-40899748)


Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 37211179 - 37210945
Alignment:
Q  1 aaaaattgactccatcttttcccagcttattgattcctcgtgcgccctatacaattcagattatagaattcgaacactataaacaccctataaaaacctt 100  Q
    |||||||||||||||||||||||||||||||||||||||||       ||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  37211179 aaaaattgactccatcttttcccagcttattgattcctcgt-------atacagttcagattatagaattcgaacgctataaacaccctataaaaacctt 37211087  T
Q  101 caaaacttataaaatatttcggattttatatttataatctgaatagggcgcgtgagaaactcataggatgaaaaaagtaataatcaaaaaactttaagcc 200  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37211086 caaaacttataaaacatttcggattttatatttataatctgaataggacgcgtgagaaactcataggatgaaaaaagtaataatcaaaaaactttaagcc 37210987  T
Q  201 ctacaaacttgggcctaggttgtcgcatctcgggcctatgct 242  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  37210986 ctacaaacttgggcctaggttgtcgcatctcgggcctatgct 37210945  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 9540594 - 9540643
Alignment:
Q  131 tttataatctgaatagggcgcgtgagaaactcataggatgaaaaaagtaa 180  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  9540594 tttagaatctgaatagggcgcgtgagaaactcataggatgagaaaagtaa 9540643  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 29389145 - 29389204
Alignment:
Q  46 cctatacaattcagattatagaattcgaacactataaacaccctataaaaaccttcaaaa 105  Q
    |||||||| ||| ||||||| ||| ||||||  |||||||||| ||||||||||||||||    
T  29389145 cctatacagttcggattataaaatccgaacagcataaacacccaataaaaaccttcaaaa 29389204  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 169
Target Start/End: Original strand, 33240836 - 33240956
Alignment:
Q  43 cgccctatacaattcagattatagaattcgaacactataaacaccctataaaaaccttcaaaacttataaaatatttcggattttatatttataatctga 142  Q
    ||||||||||| ||  |||| |||||| |||||  |||||| |||| ||||||||||||||||    | |||||||||||||      |||| |||| ||    
T  33240836 cgccctatacagtttggattttagaatccgaactgtataaataccccataaaaaccttcaaaaacgttgaaatatttcggat------tttagaatccga 33240929  T
Q  143 atagggcgcgtgagaaactcataggat 169  Q
    |||||||||  ||||||||||||||||    
T  33240930 atagggcgcacgagaaactcataggat 33240956  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 9929426 - 9929362
Alignment:
Q  42 gcgccctatacaattcagattatagaattcgaacactataaacaccctataaaaaccttcaaaac 106  Q
    ||||||||| || ||| |||||||||||||||||   |||||||||  |||||||||| ||||||    
T  9929426 gcgccctatgcagttcggattatagaattcgaacgtcataaacacctcataaaaacctccaaaac 9929362  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 18075587 - 18075623
Alignment:
Q  131 tttataatctgaatagggcgcgtgagaaactcatagg 167  Q
    |||||||| |||||||||||| |||||||||||||||    
T  18075587 tttataatttgaatagggcgcatgagaaactcatagg 18075623  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 190
Target Start/End: Original strand, 32177341 - 32177390
Alignment:
Q  141 gaatagggcgcgtgagaaactcataggatgaaaaaagtaataatcaaaaa 190  Q
    |||||||||| |||||||||||||||||||| ||||||||| | ||||||    
T  32177341 gaatagggcgtgtgagaaactcataggatgagaaaagtaatgaccaaaaa 32177390  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 5868026 - 5868067
Alignment:
Q  143 atagggcgcgtgagaaactcataggatgaaaaaagtaataat 184  Q
    ||||||||||||||||||||||||||||| ||||| ||||||    
T  5868026 atagggcgcgtgagaaactcataggatgagaaaagaaataat 5868067  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 176
Target Start/End: Complemental strand, 24166834 - 24166794
Alignment:
Q  136 aatctgaatagggcgcgtgagaaactcataggatgaaaaaa 176  Q
    |||| ||||||||||||||||||||||||||| || |||||    
T  24166834 aatccgaatagggcgcgtgagaaactcatagggtggaaaaa 24166794  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 181
Target Start/End: Complemental strand, 2391620 - 2391581
Alignment:
Q  142 aatagggcgcgtgagaaactcataggatgaaaaaagtaat 181  Q
    ||||| ||||| ||||||||||||||||||||||||||||    
T  2391620 aatagtgcgcgcgagaaactcataggatgaaaaaagtaat 2391581  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 40172484 - 40172543
Alignment:
Q  46 cctatacaattcagattatagaattcgaacactataaacaccctataaaaaccttcaaaa 105  Q
    ||||| |||||| |||||||||||| |||||  |||||||||| |||||||||| |||||    
T  40172484 cctatgcaattcggattatagaatttgaacaacataaacacccaataaaaacctccaaaa 40172543  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 105
Target Start/End: Complemental strand, 46940079 - 46940016
Alignment:
Q  42 gcgccctatacaattcagattatagaattcgaacactataaacaccctataaaaaccttcaaaa 105  Q
    |||||||||||| ||| ||||||||||| ||||||  |||||||  ||||||| ||||||||||    
T  46940079 gcgccctatacagttcggattatagaatccgaacaacataaacaatctataaagaccttcaaaa 46940016  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 177
Target Start/End: Complemental strand, 31078771 - 31078737
Alignment:
Q  143 atagggcgcgtgagaaactcataggatgaaaaaag 177  Q
    ||||| |||||||||||||||||||||||||||||    
T  31078771 ataggacgcgtgagaaactcataggatgaaaaaag 31078737  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 105
Target Start/End: Complemental strand, 40899748 - 40899694
Alignment:
Q  51 acaattcagattatagaattcgaacactataaacaccctataaaaaccttcaaaa 105  Q
    ||||||||||||||| ||||||||    |||||||||| ||||||||||||||||    
T  40899748 acaattcagattataaaattcgaaaggcataaacaccccataaaaaccttcaaaa 40899694  T

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