View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10700_low_3 (Length: 445)
Name: NF10700_low_3
Description: NF10700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10700_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 22 - 439
Target Start/End: Original strand, 3566508 - 3566932
Alignment:
| Q |
22 |
catgaccatatgcatacattcatacaagatcaaccaacaatgcaaacttagatatcagattattaactaagtacttggcatatgtttctatccaattgca |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3566508 |
catgaccatatgcatacattcatacaagatcaaccaacaatgcaaacttagatatcagattattaactaagtacttggcacatgtttctatccaattgca |
3566607 |
T |
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| Q |
122 |
tagccatagcattaaagaaacaaatacctttt-------tatatcactatcgcttcgaatcttgctgtgctagcatgttgcctctcaatataacatggtt |
214 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
3566608 |
tagccatagcattaaagaaacaaatacctttttaatttttatatcactatcgcttcgaatcttgctgtcctagcatgttgcatctcaatataacatggtt |
3566707 |
T |
|
| Q |
215 |
tgaactttttgcatttgatgaaattgttgttataactcttttttgcaaaggaaaaacccttgtgaagtgcattttcttatccacattgttacctgcatga |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3566708 |
tgaactttttgcatttgatgaaattgttgttataactcttttttgcaaaggaaaaacccttgtgaagtgcattttcttatccacattgttacctgcatga |
3566807 |
T |
|
| Q |
315 |
taatgaaagattaacataattattttgtggagttttcttttttcccctttagcatattaccgaagctgaattcccaattagtgtaattaggtgttggttt |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3566808 |
taatgaaagattaacataattattttgtggagttttcttttttcccctttagcatattaccgaagctgaattcccaattagagtaattaggtgttggttt |
3566907 |
T |
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| Q |
415 |
tgattgttgtagcacttcttctctc |
439 |
Q |
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|||||||||||||||||||| |||| |
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| T |
3566908 |
tgattgttgtagcacttcttttctc |
3566932 |
T |
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