View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10700_low_4 (Length: 421)
Name: NF10700_low_4
Description: NF10700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10700_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 45 - 410
Target Start/End: Complemental strand, 33273960 - 33273595
Alignment:
| Q |
45 |
aaaaaacttcaaacttttgatgtattattcgaatgaaaatgaatgtggattgataagatcctaagttataataatctttcacgtagacaagtccaaaaaa |
144 |
Q |
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| T |
33273960 |
aaaaaacctcaaacttttgatgtattattcgaatgaaaatgaatgtggattgataagttcctaagttataataatctttcgggtagacaagtccaaaaaa |
33273861 |
T |
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| Q |
145 |
tacacttttcatagctacaacaaactaattctccaagaaaggctccccatgtgggacccacaactcatgttcaaattaaataaccctattaaattccaac |
244 |
Q |
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| T |
33273860 |
tacacttttcttagctagaacaaactaattctccaagaaaggctccccatgtgggacccacaactcatgttcaaattaaataaccctattaaattccaac |
33273761 |
T |
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| Q |
245 |
aacactgatattcaacaagatactagcagccaagtaaaccgcatctcaacaaaatcgatatcacatatttaacatacgacgtgttcaacaataaataata |
344 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33273760 |
aacattgatattcaacaagctactagcagccaagtaaaccgcatctcaacaaaatcgatatcacatatttaacatacgacgtgttcaacaataaataata |
33273661 |
T |
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| Q |
345 |
tacaaacatacctaacctaatttccctaaccttatagcgtggaacataattttcccacacattcat |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33273660 |
tacaaacatacctaacctaatttccctaaccttatagcgtggaacataattttcccacacattcat |
33273595 |
T |
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