View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10700_low_6 (Length: 384)

Name: NF10700_low_6
Description: NF10700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10700_low_6
NF10700_low_6
[»] chr6 (2 HSPs)
chr6 (17-376)||(9538680-9539038)
chr6 (292-342)||(2445291-2445341)
[»] chr5 (3 HSPs)
chr5 (276-342)||(38756722-38756788)
chr5 (275-323)||(30488936-30488984)
chr5 (296-332)||(42608888-42608924)
[»] chr7 (3 HSPs)
chr7 (274-341)||(29726793-29726860)
chr7 (302-331)||(26980965-26980994)
chr7 (271-331)||(5458069-5458129)
[»] chr8 (2 HSPs)
chr8 (274-328)||(13284266-13284320)
chr8 (274-331)||(40167325-40167382)
[»] chr2 (1 HSPs)
chr2 (274-332)||(9547410-9547468)
[»] chr1 (6 HSPs)
chr1 (296-342)||(4896633-4896679)
chr1 (297-331)||(15382843-15382877)
chr1 (297-330)||(5553025-5553058)
chr1 (274-331)||(10841903-10841960)
chr1 (271-331)||(3777721-3777781)
chr1 (305-341)||(41032924-41032960)
[»] scaffold0008 (1 HSPs)
scaffold0008 (295-344)||(119559-119608)


Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 17 - 376
Target Start/End: Original strand, 9538680 - 9539038
Alignment:
Q  17 agaaaaaatgtatgagagttgagtaaagagtaatgaagaagtggttaaatgctttgataaaggaacttagttgaagagtgaatataatgggactaaattt 116  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  9538680 agaaaaaatatatgagagttgagtaaagagtcatgaagaagtggttaaatgctttgataaagggacttagttgaagagtgaatataatggtactaaattt 9538779  T
Q  117 tttgaagtgtgtggtttacttaatttttggattcttttcttttataacaaggcctctccatgtgtcaatca-ttttttgataagggaaatatgtagattc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||    
T  9538780 tttgaagtgtgtggtttacttaatttttggattcttttcttttataacaaggcctctccatgtgtcaataatttttttgataagggaaatatttagattc 9538879  T
Q  216 tgtcgtagtagctacaaggagaactatcacatgtatcannnnnnnnnatgatgaccgaggtttgaatcccaaaccgtgtaaatatgatacattgttcata 315  Q
    ||| |||||||||| |||||||||||||||||||| ||          |||||||||||||||||| |||| ||| | |||||||||||||||||| |||    
T  9538880 tgtggtagtagctataaggagaactatcacatgtaccattttttag--tgatgaccgaggtttgaaccccagaccttataaatatgatacattgtttata 9538977  T
Q  316 tcaactgagttaagctttcgaggacatcacatgcatcagcttatagttgcagattcttctc 376  Q
     |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9538978 ccaactgagttaagctttcgaggacatcacatgcatcagtttatagttgcagattcttctc 9539038  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 342
Target Start/End: Complemental strand, 2445341 - 2445291
Alignment:
Q  292 tgtaaatatgatacattgttcatatcaactgagttaagctttcgaggacat 342  Q
    |||| |||| || |||||||||||||||||||||||||||| |||||||||    
T  2445341 tgtatatattatgcattgttcatatcaactgagttaagcttacgaggacat 2445291  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 342
Target Start/End: Complemental strand, 38756788 - 38756722
Alignment:
Q  276 tttgaatcccaaaccgtgtaaatatgatacattgttcatatcaactgagttaagctttcgaggacat 342  Q
    |||||| ||| |||| |||| |||| ||||||| ||||||||||||||||||| ||| |||||||||    
T  38756788 tttgaaccccgaaccttgtatatattatacattattcatatcaactgagttaaacttacgaggacat 38756722  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 30488984 - 30488936
Alignment:
Q  275 gtttgaatcccaaaccgtgtaaatatgatacattgttcatatcaactga 323  Q
    ||||||| |||||||| |||| |||| || |||||||||||||||||||    
T  30488984 gtttgaaccccaaaccttgtatatattatgcattgttcatatcaactga 30488936  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 332
Target Start/End: Original strand, 42608888 - 42608924
Alignment:
Q  296 aatatgatacattgttcatatcaactgagttaagctt 332  Q
    ||||| || ||||||||||||||||||||||||||||    
T  42608888 aatattatgcattgttcatatcaactgagttaagctt 42608924  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 274 - 341
Target Start/End: Complemental strand, 29726860 - 29726793
Alignment:
Q  274 ggtttgaatcccaaaccgtgtaaatatgatacattgttcatatcaactgagttaagctttcgaggaca 341  Q
    |||||||| ||| |||| || | |||| ||||||||||||| ||||||||||||||||  ||||||||    
T  29726860 ggtttgaaccccgaaccttgcatatattatacattgttcatgtcaactgagttaagctcacgaggaca 29726793  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 331
Target Start/End: Original strand, 26980965 - 26980994
Alignment:
Q  302 atacattgttcatatcaactgagttaagct 331  Q
    ||||||||||||||||||||||||||||||    
T  26980965 atacattgttcatatcaactgagttaagct 26980994  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 331
Target Start/End: Original strand, 5458069 - 5458129
Alignment:
Q  271 cgaggtttgaatcccaaaccgtgtaaatatgatacattgttcatatcaactgagttaagct 331  Q
    |||||||||||||||| ||| || | |||| || |||||||| ||||||||||| ||||||    
T  5458069 cgaggtttgaatcccagaccttgcatatattatgcattgttcttatcaactgagctaagct 5458129  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 328
Target Start/End: Original strand, 13284266 - 13284320
Alignment:
Q  274 ggtttgaatcccaaaccgtgtaaatatgatacattgttcatatcaactgagttaa 328  Q
    |||||||| | |||||| | || |||| |||||||||||||||||||||||||||    
T  13284266 ggtttgaacctcaaaccttatatatattatacattgttcatatcaactgagttaa 13284320  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 331
Target Start/End: Complemental strand, 40167382 - 40167325
Alignment:
Q  274 ggtttgaatcccaaaccgtgtaaatatgatacattgttcatatcaactgagttaagct 331  Q
    |||||||||||| |||| |||| |||| || |||||| |||| |||||||||||||||    
T  40167382 ggtttgaatcccgaaccttgtatatattatgcattgtccataccaactgagttaagct 40167325  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 332
Target Start/End: Original strand, 9547410 - 9547468
Alignment:
Q  274 ggtttgaatcccaaaccgtgtaaatatgatacattgttcatatcaactgagttaagctt 332  Q
    |||||||| |||||||| || | |||| || |||||| |||||||||||||||||||||    
T  9547410 ggtttgaaccccaaaccttgcatatattatgcattgtccatatcaactgagttaagctt 9547468  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 342
Target Start/End: Complemental strand, 4896679 - 4896633
Alignment:
Q  296 aatatgatacattgttcatatcaactgagttaagctttcgaggacat 342  Q
    ||||| ||||||||| ||||||||||||||||||||| ||| |||||    
T  4896679 aatattatacattgtccatatcaactgagttaagcttacgaagacat 4896633  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 331
Target Start/End: Original strand, 15382843 - 15382877
Alignment:
Q  297 atatgatacattgttcatatcaactgagttaagct 331  Q
    |||| ||||||||||||||||||||||||||||||    
T  15382843 atattatacattgttcatatcaactgagttaagct 15382877  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Original strand, 5553025 - 5553058
Alignment:
Q  297 atatgatacattgttcatatcaactgagttaagc 330  Q
    |||| |||||||||||||||||||||||||||||    
T  5553025 atattatacattgttcatatcaactgagttaagc 5553058  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 331
Target Start/End: Complemental strand, 10841960 - 10841903
Alignment:
Q  274 ggtttgaatcccaaaccgtgtaaatatgatacattgttcatatcaactgagttaagct 331  Q
    |||||||||| |||||| | || |||| || |||||| ||||||||||||||||||||    
T  10841960 ggtttgaatctcaaaccttatatatattatgcattgtccatatcaactgagttaagct 10841903  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 331
Target Start/End: Complemental strand, 3777781 - 3777721
Alignment:
Q  271 cgaggtttgaatcccaaaccgtgtaaatatgatacattgttcatatcaactgagttaagct 331  Q
    ||||||||||| | | |||| |||| |||| ||||||| | ||||||||||||||||||||    
T  3777781 cgaggtttgaacctcgaaccttgtatatattatacattatccatatcaactgagttaagct 3777721  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 341
Target Start/End: Complemental strand, 41032960 - 41032924
Alignment:
Q  305 cattgttcatatcaactgagttaagctttcgaggaca 341  Q
    |||||||||||||||||||||||||||  ||||||||    
T  41032960 cattgttcatatcaactgagttaagctcacgaggaca 41032924  T

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Target: scaffold0008 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 344
Target Start/End: Complemental strand, 119608 - 119559
Alignment:
Q  295 aaatatgatacattgttcatatcaactgagttaagctttcgaggacatca 344  Q
    |||||| ||||||||| | ||||||||||||||||||  |||||||||||    
T  119608 aaatattatacattgtccctatcaactgagttaagctcacgaggacatca 119559  T

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