View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10700_low_7 (Length: 343)
Name: NF10700_low_7
Description: NF10700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10700_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 5 - 316
Target Start/End: Complemental strand, 19296458 - 19296144
Alignment:
| Q |
5 |
atcacatactaatagttcattttaggatc-accatcacaattatacgaacctttttctaaagtttaagccaccaataacttacatttcaatgaatatatt |
103 |
Q |
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||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
19296458 |
atcacatactaatagctcattttagcatccaccatcacaattatacgaacctttttctaaagtttaagccaccaataacacacatttcaatgaatatatt |
19296359 |
T |
|
| Q |
104 |
tatactcttgtgatagactacaataagacacaccacgaagactaacataatcgaagcatcagaaacacactaaagagatcataaatgtagattaaaataa |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19296358 |
tatactcttgtgatagactacaataagacacaccacgaagactaatataatcaaagcatcagaaacacactaaagagatcataaatgtagattaaaataa |
19296259 |
T |
|
| Q |
204 |
taagttacatggacatggagatttagtcgccatctccgaatcatgagtactcgtaaaatggtgaa--acccgtacaagatacatatacaatactcatggt |
301 |
Q |
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||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
19296258 |
taagttacatggacatggagatttaatcgccatctctgaagcatgagtactcgtaaaatggcgaagtacccgtacaagatacatatacaatactcatggt |
19296159 |
T |
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| Q |
302 |
actttattgttgctc |
316 |
Q |
| |
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|||||||| |||||| |
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| T |
19296158 |
actttatttttgctc |
19296144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 125 - 261
Target Start/End: Complemental strand, 21979304 - 21979168
Alignment:
| Q |
125 |
aataagacacaccacgaagactaacataatcgaagcatcagaaacacactaaagagatcataaatgtagattaaaataataagttacatggacatggaga |
224 |
Q |
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|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||| |||||||| |||| |
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| T |
21979304 |
aataagacacactacagagactaacataatcgaagcatcagaaacacactaaagagatcatagatgtaagtgaaaataataagttatatggacatagaga |
21979205 |
T |
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| Q |
225 |
tttagtcgccatctccgaatcatgagtactcgtaaaa |
261 |
Q |
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|||||| |||||||| ||| |||||||||||||||| |
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| T |
21979204 |
tttagtagccatctctgaagtatgagtactcgtaaaa |
21979168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 5 - 121
Target Start/End: Complemental strand, 21980171 - 21980054
Alignment:
| Q |
5 |
atcacatactaatagttcatttt-aggatc-accatcacaatta-tacgaacctttttctaaagtttaagccaccaataacttacatttcaatgaatata |
101 |
Q |
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||||||||||||||| ||||||| || ||| ||||||||||||| || |||| |||||||||| ||||||||||||||||| ||||||||| ||| ||| |
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| T |
21980171 |
atcacatactaatagctcatttttagcatccaccatcacaattaatatgaacgtttttctaaattttaagccaccaataacatacatttcattga--ata |
21980074 |
T |
|
| Q |
102 |
tttatactcttgtgatagac |
121 |
Q |
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|||||||||||||||||||| |
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| T |
21980073 |
tttatactcttgtgatagac |
21980054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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