View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10700_low_8 (Length: 306)
Name: NF10700_low_8
Description: NF10700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10700_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 300
Target Start/End: Original strand, 45800804 - 45801087
Alignment:
| Q |
17 |
agagaattaaatagaggaaatgaagtggaagcaatgttatactcctaaaaagtcccaatctgttcaatgctcatgctgtcatgcatatgttgttttccct |
116 |
Q |
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| T |
45800804 |
agagaattaaatagaggaaatgaagtggaagcaatgttatactcataaaaagtcccaatctgctcaatgctcatgctgtcatgcatatgttgttttccct |
45800903 |
T |
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| Q |
117 |
tcacgcagtatctatcatttattttttgcgagagatgaagtttacaagcacagtagcattcaagtttctgagttaatatatttcttcctcgaaataacat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45800904 |
tcacgcagtatctatcatttattttttgcgagagatgaagtttacaagcacagtagcattcaagtttctgagttaatatatttcttcctcgaaataacat |
45801003 |
T |
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| Q |
217 |
taatatttctcttgtatgattggctagttcatcgtatattaccagtgatttgtggcacttgttaatattctttattacctatgc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45801004 |
taatatttctcttgtatgattggctagttcatcgtatattaccagtgatttgtggcacttgttaatattctttattacctatgc |
45801087 |
T |
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