View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10700_low_9 (Length: 297)
Name: NF10700_low_9
Description: NF10700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10700_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 16 - 287
Target Start/End: Complemental strand, 51037017 - 51036746
Alignment:
| Q |
16 |
ataaacacctatcgtgatgtatgtattgatttgcnnnnnnnacttcacttaactttcttttagttctaatctatgaagtactggcacaaacaccagatac |
115 |
Q |
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|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51037017 |
ataaacacctattgtgatgtatgtattgatttgctttttttacttcacttaactttcttttagttctaatctatgaagtactggcacaaacaccagatac |
51036918 |
T |
|
| Q |
116 |
gacacataaacaaagataaaattatagaaattaaaagtagctaaatgtaactacgtgtattggttagtatcgtgttaattagtgtagaatactaacatat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51036917 |
gacacataaacaaagataaaattatagaaattaaaagtagctaaatgtaactacgtgtattggttagtatcgtgttaattagtgtagaatactaacatat |
51036818 |
T |
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| Q |
216 |
gtcagacaacatgtacgacagctaactggtgttcaatctaaaatgtgtgtgatgcatagattatgtcctatg |
287 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51036817 |
gtcagacaccatgtacgacagctaactggtgttcaatctaaaatgtgtgtgatgcatagattatgtcctatg |
51036746 |
T |
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