View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10701_high_2 (Length: 440)
Name: NF10701_high_2
Description: NF10701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10701_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 40 - 433
Target Start/End: Original strand, 31097942 - 31098334
Alignment:
| Q |
40 |
catcacccttaaccttgaatacatcgagtgattcagcattgattaactagtcattaatttctctctttcgtccatgacataacagaagcaggaagtctat |
139 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31097942 |
catctcccttaaccttgaatacatcaagtgattcagcattgattaactggtcattaatttctctctttcgtccatgacataacagaagcaggaagtctat |
31098041 |
T |
|
| Q |
140 |
catttgcctcatatgatattgctcgatctttatgagtcacaattgaatctcagtatgtgaacacatcaccttctcatgttatgtccgtaaacaatcaact |
239 |
Q |
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||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31098042 |
catttgcctcatatgatattgctcgatctttgtgt-tcacaattgaatctcggtatgtgaacacatcaccttctcatgttatgtccgtaaacaatcaact |
31098140 |
T |
|
| Q |
240 |
tcaactctgcacaaagggagaaaaatcaatcaccgattacttgttgttctcatttaaaagtcttgcggatgaacttgttgttattgattgaaccctttta |
339 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31098141 |
tcaactctgcacaaagggagaaaaatcaatcaccgattacttgttgttctcatttagaagtcttgcggatgaacttgttgttattgattgaaccctttta |
31098240 |
T |
|
| Q |
340 |
gatgatgattttacccttcatattctgaatggtctttgcacttaaaatcgcggcacttcagactccattcgcacatgtcaacacccctttgctt |
433 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31098241 |
gatgatgattttacccttcatattatgaatggtctttgcacttaaaatcgcggcacttcagactccattcgcacatgtcaacacccctttgctt |
31098334 |
T |
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