View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10701_low_14 (Length: 280)
Name: NF10701_low_14
Description: NF10701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10701_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 45273411 - 45273150
Alignment:
| Q |
1 |
tgtgatgcatggctcggagacaaattgtaattctttgtaataatctttcctgtttttgtacaggggatccaccagtaatacaaatgaaaatttgctcgaa |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45273411 |
tgtgatgcatggctcggagacaaattgttattctttgtaataatctttgctgtttttgtacaggggatccaccagtaatacaaatgaaaatttgctcgaa |
45273312 |
T |
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| Q |
101 |
tgatagtatcagcttcaattttcatttttcctttgatcattcaaatataattaattatacagaagcgttactgcaaacttcatacacaaaaacgnnnnnn |
200 |
Q |
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| T |
45273311 |
tgatagtataagcttcaattttcatttttcctttgatcattcaaatata----attatacagaaacgttactgcaaacttcatacacaaaaacgtttttt |
45273216 |
T |
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| Q |
201 |
ngcttaaccataatgttaatagaagctcttaaatgcaaatgaataattgatcatttaagaaaaaag |
266 |
Q |
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||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
45273215 |
tgcttaaccatattgttaatagaagctattaaatgcaaatgaataattgatcatttaagaaaaaag |
45273150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 45269863 - 45269607
Alignment:
| Q |
1 |
tgtgatgcatggctcggagacaaattgtaattctttgtaataatctttcctgtttttgtacaggggatccaccagtaatacaaatgaaaatttgctcgaa |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||| |
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| T |
45269863 |
tgtgatgcatggctcggagacaaattgttattctttgtaataatctttcctgtttttgtacaggagatccaccagaaatacaaacgaaaatttgctcgaa |
45269764 |
T |
|
| Q |
101 |
tgatagtatcagcttcaattttcatttttcctttgatcattcaaatataattaattatacagaagcgttactgcaaacttcatacacaaaaacgnnnnnn |
200 |
Q |
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||| ||||| |||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
45269763 |
tgaaagtataagcttcaattttca-------tttgatcattcaaatat-----attattcagaagcgttactgcaagcttcatacacaaaaacgtttttt |
45269676 |
T |
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| Q |
201 |
ngcttaa-ccataatgttaatagaagctcttaaatgcaaatgaat--aattgatcatttaagaaaaaag |
266 |
Q |
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|||||| ||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
45269675 |
tgcttaatccatattgttaatagaagctattaaatgcaaatgaataaaattgatcatttaagaaaaaag |
45269607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 45279083 - 45278935
Alignment:
| Q |
1 |
tgtgatgcatggctcggagacaaattgtaattctttgtaataatctttcctgtttttgtacaggggatccaccagtaatacaaatgaaaatttgctcgaa |
100 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||| | |||||||||| |||||||||||||||||||||||| |
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| T |
45279083 |
tgtgatgcatggctcggagacaaattgttattctttgtaattatctttcctatttttgtacatgagatccaccagaaatacaaatgaaaatttgctcgaa |
45278984 |
T |
|
| Q |
101 |
tgatagtatcagcttcaattttcatttttcctttgatcattcaaatataa |
150 |
Q |
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| T |
45278983 |
ttatagtttaagcttcaattttcattttt-tttttatcattcaaatataa |
45278935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 45281749 - 45281601
Alignment:
| Q |
1 |
tgtgatgcatggctcggagacaaattgtaattctttgtaataatctttcctgtttttgtacaggggatccaccagtaatacaaatgaaaatttgctcgaa |
100 |
Q |
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|||||||||||| ||||||||||||||| |||||||||||| ||||||| | ||||| |||| | ||||| |||| |||||||||||||||||||||||| |
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| T |
45281749 |
tgtgatgcatgggtcggagacaaattgttattctttgtaattatctttcgtatttttatacatgagatcccccagaaatacaaatgaaaatttgctcgaa |
45281650 |
T |
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| Q |
101 |
tgatagtatcagcttcaattttcatttttcctttgatcattcaaatataa |
150 |
Q |
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| ||||| | ||||| ||||||||||||| ||| ||||||| ||||||| |
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| T |
45281649 |
ttatagtttaagctttaattttcattttt-tttttatcattcgaatataa |
45281601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 45293089 - 45292941
Alignment:
| Q |
1 |
tgtgatgcatggctcggagacaaattgtaattctttgtaataatctttcctgtttttgtacaggggatccaccagtaatacaaatgaaaatttgctcgaa |
100 |
Q |
| |
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||||||||||||| | | ||||||| | |||||||||||| | ||| ||| | ||| | |||| |||||||||| |||||||||||||||||||||||| |
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| T |
45293089 |
tgtgatgcatggcacataaacaaattattattctttgtaattacctt-cctatatttttccaggagatccaccagaaatacaaatgaaaatttgctcgaa |
45292991 |
T |
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| Q |
101 |
tgatagtatcagcttcaattttcatttttcctttgatcattcaaatataa |
150 |
Q |
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| T |
45292990 |
ttatagtttaagcttcaattttcatttttcttttgatcattcaaatataa |
45292941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 45302049 - 45301901
Alignment:
| Q |
1 |
tgtgatgcatggctcggagacaaattgtaattctttgtaataatctttcctgtttttgtacaggggatccaccagtaatacaaatgaaaatttgctcgaa |
100 |
Q |
| |
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||||||||||||| | | ||||||| | |||||||||||| | ||| ||| | ||| | |||| |||||||||| |||||||||||||||||||||||| |
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| T |
45302049 |
tgtgatgcatggcacataaacaaattattattctttgtaattacctt-cctatatttttccaggagatccaccagaaatacaaatgaaaatttgctcgaa |
45301951 |
T |
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| Q |
101 |
tgatagtatcagcttcaattttcatttttcctttgatcattcaaatataa |
150 |
Q |
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| ||||| | |||||||||||||||||||| ||||||||||||||||||| |
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| T |
45301950 |
ttatagtttaagcttcaattttcatttttcttttgatcattcaaatataa |
45301901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 223 - 266
Target Start/End: Complemental strand, 45278685 - 45278642
Alignment:
| Q |
223 |
aagctcttaaatgcaaatgaataattgatcatttaagaaaaaag |
266 |
Q |
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||||| ||| ||||||||||||||| |||||||||||||||||| |
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| T |
45278685 |
aagctgttatatgcaaatgaataatcgatcatttaagaaaaaag |
45278642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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