View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10701_low_16 (Length: 239)
Name: NF10701_low_16
Description: NF10701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10701_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 16559117 - 16558891
Alignment:
| Q |
1 |
atttcatatagctgctactttaagtagca-taataatatttttgtcaaaaacaaaagtagccgtaataataaaaatcgacattcttttaatttccctcaa |
99 |
Q |
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| T |
16559117 |
atttcatatagctgctacttcaagtagcagtaataatatttttgtcaaaaacaaaagtagccgtaataataaaaatcgacattcttttcatttccctcaa |
16559018 |
T |
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| Q |
100 |
aagttacccacaaatttcttgattcattcat----agctagcacttcattcgctagtcgagtgtcttgaattccaatatttttctatttcttctgctgtt |
195 |
Q |
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| T |
16559017 |
a-gttacccacaaatttcttgattcattcattcatagctggcacttcattcgctagtcgagtgtcttgaattccaatatttttctatttcttctgctgtt |
16558919 |
T |
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| Q |
196 |
cttccaggaattcttccagcaatcaatg |
223 |
Q |
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| T |
16558918 |
cttccaggaattcttccagcaatcaatg |
16558891 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 37413950 - 37414014
Alignment:
| Q |
154 |
gagtgtcttgaattccaatatttttctatttcttctgctgttcttccaggaattcttccagcaat |
218 |
Q |
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| T |
37413950 |
gagtgtcttgaaatccagtaattctttatttcttcagctgttcttccaggtattcttcccgcaat |
37414014 |
T |
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