View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10701_low_18 (Length: 229)
Name: NF10701_low_18
Description: NF10701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10701_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 5e-83; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 776814 - 776651
Alignment:
| Q |
1 |
ctaaaaacaactttaagaaaataattaaatggaacaagatggaaagaaataaaggatagaatctattgatgacaagtgatcccctcatgaaaggcaagtg |
100 |
Q |
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| T |
776814 |
ctaaaaacaactttaagaaaataattaaatggaacaagatggaaagaaataaaggatagaatctattgatgacaagtgatcccctcatgaaaggcaagtc |
776715 |
T |
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| Q |
101 |
caaagcatatataaaagcatggtcatgtagtagagccaatgagcaagttatcaaagcatacatt |
164 |
Q |
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| T |
776714 |
caaagcatatataaaagcatggtcatgtagtagagccaatgagcaagttatcagagcatacatt |
776651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 8458534 - 8458751
Alignment:
| Q |
1 |
ctaaaaacaactttaagaaaataattaaatggaacaagatggaaagaaataaaggatagaatctattgatgacaagtgatcccctcatgaaaggcaagtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8458534 |
ctaaaaacaactttaagaaaataattaaatggaacaagatagaaagaaacaaaggatagaatctattgatgacaagtgatcccctcatgaaaggcaagtc |
8458633 |
T |
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| Q |
101 |
caaagcatatataaaagcatggtcatgtagtagagccaatgagcaagttatcaaagcatacattattatattagcaacnnnnnnnnnnnntacattgtta |
200 |
Q |
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| T |
8458634 |
caaagcatatataaaagcatgtgcatgtagtagggccaatgagcaagttatcaaagcacatattattatatttgcaacaaaaagaaagcatacattgtta |
8458733 |
T |
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| Q |
201 |
attatgcgtattaaatca |
218 |
Q |
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| T |
8458734 |
attatgcgtattaaatca |
8458751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 818033 - 817869
Alignment:
| Q |
1 |
ctaaaaacaactttaagaaaataattaaatggaacaagatggaaagaaataaaggatagaatctattgatgacaagtgatcccctcatgaaaggcaagtg |
100 |
Q |
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||||||| |||||||||| ||||||||||||||||||||| |||| | ||| ||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
818033 |
ctaaaaaaaactttaagacaataattaaatggaacaagatagaaa---agaaaagatagaatctattgatgacaagtgatcacctcatgaaaggcaagtc |
817937 |
T |
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| Q |
101 |
caaagcatatataaaagcatggtcatgtagtagagccaatgagcaagttatcaaagcatacattatta |
168 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
817936 |
caaagcatatataaaagcatggtcatgtagtagagccaatgagcaaattatcaaagcatacattatta |
817869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 191 - 229
Target Start/End: Complemental strand, 776596 - 776558
Alignment:
| Q |
191 |
tacattgttaattatgcgtattaaatcaatgaaccctct |
229 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |
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| T |
776596 |
tacattattaattatgcgtattaaatcaatgaaccctct |
776558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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