View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10701_low_3 (Length: 442)
Name: NF10701_low_3
Description: NF10701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10701_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 377; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Original strand, 43609808 - 43610233
Alignment:
| Q |
1 |
ttcgacattcttctttgctgttctgctcaggtaaatttttgaaaaccacattaattttttaaacaaaaagaagcaagtcctttttaaatttgatatatta |
100 |
Q |
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| T |
43609808 |
ttcgacattcttctttgctgttctgctcaggtaaatttttgaaaaccacattaagtttttaaacaaaaagaagcaaggcctttttaaatttgatatatta |
43609907 |
T |
|
| Q |
101 |
agattctcaactgttcattatatattgtagagtggagaaggtaaatataaggacaaaatctggaatttcaaagatagggagtgttttattgtgcatgatc |
200 |
Q |
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| T |
43609908 |
agattctcaactattcattatatattgtagagtggagaaggtaaatataaggacaaaatctggaatttcaaagatagggagtgttttattgtgcatggcc |
43610007 |
T |
|
| Q |
201 |
ggtgtagcgattctggccttttacaagggaccccaattgcgaattgcacgtcacctcccatctggatatcatcacaactatcaacaacatgaagatagtg |
300 |
Q |
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| T |
43610008 |
ggtgtagcgattctggccttttacaagggaccccaattgcgaattgcacgtcacctcccatctggatatcatcacaactatcaacaacatgaagatagtg |
43610107 |
T |
|
| Q |
301 |
aatcatatgacagaaaatggattttgggttctttactcttgttcctaactaccattacctggagtttgtggattgtacttcaggtaccataatttaattc |
400 |
Q |
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| T |
43610108 |
aatcatatgacaaaaaatggattttgggttctttactcttgttcctaactaccattacctggagtttgtggattgtacttcaggtagcataatttaa--- |
43610204 |
T |
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| Q |
401 |
catttccatgccttttggataatttccctttg |
432 |
Q |
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| T |
43610205 |
---ttccatgccttttggataatttccttttg |
43610233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 121 - 399
Target Start/End: Original strand, 43616553 - 43616832
Alignment:
| Q |
121 |
tatattgtagagtggagaaggtaaatataaggacaaaatctggaatttcaaagatagggagtgttttattgtgcatgatcggtgtagcgattctggcctt |
220 |
Q |
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| T |
43616553 |
tatattgcagagtggagaaggtaaatttaaggacaaaatctggaatttcaaagataggaagtgtattattgtgcatggccggtgtagcgattctggcatt |
43616652 |
T |
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| Q |
221 |
ttacaagggaccccaattgcgaattgcacgtcacctcccatctggatatcatcacaactatcaacaacatgaagatagtgaatcatatgacagaaaatgg |
320 |
Q |
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| T |
43616653 |
ttacaagggaccccaattacggatcgcgcgtcatcttctatctggatatcatcacaacaatcaagaacatgaatatcatgaatcatatgacaaaaaatgg |
43616752 |
T |
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| Q |
321 |
attttgggttctttactcttgttcctaactaccattacctggagtttgtggattgtacttcaggtacca-taatttaatt |
399 |
Q |
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| T |
43616753 |
attttgggtgctttactcttgttcctaggcaccatcatgtggagcttgtggcttgtacttcaggtaccattaatttaatt |
43616832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 126 - 388
Target Start/End: Original strand, 43603524 - 43603786
Alignment:
| Q |
126 |
tgtagagtggagaaggtaaatataaggacaaaatctggaatttcaaagatagggagtgttttattgtgcatgatcggtgtagcgattctggccttttaca |
225 |
Q |
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| T |
43603524 |
tgtagattggaaaaggtaaatataaggacaatatctggaatttcaaagatagtgagtgtattattgtgtatggctggtgttgcgattctggcattttaca |
43603623 |
T |
|
| Q |
226 |
agggaccccaattgcgaattgcacgtcacctcccatctggatatcatcacaactatcaacaacatgaagatagtgaatcatatgacagaaaatggatttt |
325 |
Q |
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| T |
43603624 |
agggacctcaaatacggattgcgcggcatctcctatctggatatcatcacaactatcaacaacataaagatagtgaatcacatgagaaaaaatggatttt |
43603723 |
T |
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| Q |
326 |
gggttctttactcttgttcctaactaccattacctggagtttgtggattgtacttcaggtacc |
388 |
Q |
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| T |
43603724 |
gggttctttcctcttgttcctagccacagtcatgtggagtttgtggattgtatttcaggtacc |
43603786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 43616357 - 43616410
Alignment:
| Q |
5 |
acattcttctttgctgttctgctcaggtaaatttttgaaaaccacattaatttt |
58 |
Q |
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| T |
43616357 |
acattcttctttgctgttatgctcaggtaaattttggaaaaccacattaatttt |
43616410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 43603403 - 43603457
Alignment:
| Q |
5 |
acattcttctttgctgttctgctcaggtaaatttttgaaaa-ccacattaatttt |
58 |
Q |
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| T |
43603403 |
acattcttctttgctgttctgctcaggtaaattttggaaaatcaacattaatttt |
43603457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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