View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10701_low_5 (Length: 431)
Name: NF10701_low_5
Description: NF10701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10701_low_5 |
 | |
|
| [»] scaffold0191 (1 HSPs) |
| | |
|
| [»] scaffold0022 (1 HSPs) |
| | |
|
| [»] scaffold0490 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0191 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: scaffold0191
Description:
Target: scaffold0191; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 19 - 426
Target Start/End: Original strand, 16186 - 16593
Alignment:
| Q |
19 |
gatattgattaagttaagttggtcatgtgatgaccatgctgccgtcaagtctatgttttggtcatctttctctcattttctctcatctccatgagttggt |
118 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
16186 |
gatattgattaagttaaggtggtcatgtgatgaccatgctgccgtcaagtctaagttttggtcatctttctctcatttgctctcatctccatgagttggt |
16285 |
T |
|
| Q |
119 |
gtgttttcgatttgatctcccatctcctcagttatctnnnnnnnntgaaggttatagatttgccacttgcttaattttttatgtactatgttcaagcata |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
16286 |
gtgttttcgatttgatctcccatctcctcagttatctaaaaaaaatgaaggttatagatttgctacttgcttaattttttatgtactatgttcaagcata |
16385 |
T |
|
| Q |
219 |
catatattgatagacaaaacatggattcctcaagttcaaggcgtgatgtttggaaaaaggcaaacatgactttgatcatagctctataacaacaaaatat |
318 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16386 |
catatattgatcgaccaaacatggattcctcaagttcaaggcgtgatgtttggaaaaagacaaacatgactttgatcatagctctataacaacaaaatat |
16485 |
T |
|
| Q |
319 |
caataatcaataaaattgataaacctcatttccaaaaacaaatactacatgaaaataaatacttcatatataatctaattgatatgtgatgcatttcttc |
418 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
16486 |
caataatcaataaaattgataaatatcatttccaaaaacaaatactacataaaaataaatacttcatatataatttaattgatatgtgatgcatttcttc |
16585 |
T |
|
| Q |
419 |
ttctctct |
426 |
Q |
| |
|
|| ||||| |
|
|
| T |
16586 |
ttttctct |
16593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 19 - 426
Target Start/End: Original strand, 23358 - 23779
Alignment:
| Q |
19 |
gatattgattaagttaagttggtcatgtgatgaccatgctgccgtcaagtctatgttttggtcatctttctctcattttctctcatctccatgagttggt |
118 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||| |||||||||||||| ||||||||| |||||||||||||| ||| |||||||||||||| || |
|
|
| T |
23358 |
gatattgattaagttaaggtggtcacgtgatgaccatgttgccgtcaagtctaagttttggtcctctttctctcatttgctcccatctccatgagttagt |
23457 |
T |
|
| Q |
119 |
gtgttttcgatttgatctcccatctcctcagttatctnnnnnnnntgaaggttatagatttgccacttgcttaattttttatgtactatgttcaagcata |
218 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| | |||||||||||||||||| ||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
23458 |
gtgttttcgatttgacctcccatctcctcagttatataaaaaaaatgaaggttatagatttgctacttgcttagttttttaggtactatgttcaagcata |
23557 |
T |
|
| Q |
219 |
catatattgatagacaaaacatggattcctcaagttcaaggcgtgatgtttggaaaaaggcaaa--------------catgactttgatcatagctcta |
304 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
23558 |
catatattgatagacgaaacatggattcctcaagttcaaggcgtgatgtttggaaaaaggcaaaaacattatgttatacatgaccttgatcatagctcta |
23657 |
T |
|
| Q |
305 |
taacaacaaaatatcaataatcaataaaattgataaacctcatttccaaaaacaaatactacatgaaaataaatacttcatatataatctaattgatatg |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
23658 |
taacaacaaaatatcaataatcaataaaattgataaacatcatttccaaaaacaaatactacataaaaataaatacttcatatatattctaattgatatg |
23757 |
T |
|
| Q |
405 |
tgatgcatttcttcttctctct |
426 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
23758 |
tgatgcatttcttcttttctct |
23779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 19 - 426
Target Start/End: Original strand, 13914014 - 13914436
Alignment:
| Q |
19 |
gatattgattaagttaagttggtcatgtgatgaccatgctgccgtcaagtctatgttttggtcatctttctctcattttctctcatctccatgagttggt |
118 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||| ||||| |||||||| ||| ||||||||||||| || |
|
|
| T |
13914014 |
gatattgattaagttaaggtggtcacgtgatgaccatgctgccgtcaagtctaagttttggtcctctttttctcatttgctcctatctccatgagttagt |
13914113 |
T |
|
| Q |
119 |
gtgttttcgatttgatctcccatctcctcagttatctnnnnnnnntgaaggttatagatttgccacttgcttaattttttatgtactatgttcaagcata |
218 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||| ||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
13914114 |
gtgttttcgatttgacctctcatctcctcagttatctaaaaaaaatgaaggttatagatttgctacttgcttagttttttaggtactatgttcaagcata |
13914213 |
T |
|
| Q |
219 |
catatattgatagacaaaacatggattcctcaagttcaaggcgtgatgtttggaaaaa-ggcaaa--------------catgactttgatcatagctct |
303 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||| |||||| |||||| |||||||||||||| |
|
|
| T |
13914214 |
catatattgatagacgaagcatggattcctcaagttcaaggcgtgaagtttggaaaaaaggcaaaaacattatgttatacatgaccttgatcatagctct |
13914313 |
T |
|
| Q |
304 |
ataacaacaaaatatcaataatcaataaaattgataaacctcatttccaaaaacaaatactacatgaaaataaatacttcatatataatctaattgatat |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||| | |||||||||| |
|
|
| T |
13914314 |
ataacaacaaaatatcaataatcaataaaattgataaacatcatttctaaaaacaaatactacataaaaataaatacttcatatatattttaattgatat |
13914413 |
T |
|
| Q |
404 |
gtgatgcatttcttcttctctct |
426 |
Q |
| |
|
||||||||||||||||| ||||| |
|
|
| T |
13914414 |
gtgatgcatttcttcttttctct |
13914436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 20 - 426
Target Start/End: Complemental strand, 45050334 - 45049914
Alignment:
| Q |
20 |
atattgattaagttaagttggtcatgtgatgaccatgctgccgtcaagtctatgttttggtcatctttctctcattttctctcatctccatgagttggtg |
119 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||| ||||||||||||| ||| |
|
|
| T |
45050334 |
atattgattaagttaaggtggtcacgtgatgaccatgctgccgtcaagtctaagttttggtcctctttctctcatttgctcctatctccatgagttagtg |
45050235 |
T |
|
| Q |
120 |
tgttttcgatttgatctcccatctcctcagttatctnnnnnnnntgaaggttatagatttgccacttgcttaattttttatgtactatgttcaagcatac |
219 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||| |||| ||||||| ||||||||||||||||||| |
|
|
| T |
45050234 |
tgttttcgatttgacctcccatctcctcagttatctaaaaaaaatgaaggttatagatttgctacttacttagttttttaggtactatgttcaagcatac |
45050135 |
T |
|
| Q |
220 |
atatattgatagacaaaacatggattcctcaagttcaaggcgtgatgtttggaaaaaggcaaa--------------catgactttgatcatagctctat |
305 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||| |
|
|
| T |
45050134 |
atatattgatagacgaaacatggattcctcaagttcaaggcgtgatgtttgaaaaaaggcaaaaacattatgttatacatgaccttgatcatagctctat |
45050035 |
T |
|
| Q |
306 |
aacaacaaaatatcaataatcaataaaattgataaacctcatttccaaaaacaaatactacatgaaaataaatacttcatatataatctaattgatatgt |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
45050034 |
aacaacaaaatatcaataatcaataaaattgataaacatcatttccaaaaacaaatactacataaaaataaatacttcatatatattctaattgatatgt |
45049935 |
T |
|
| Q |
406 |
gatgcatttcttcttctctct |
426 |
Q |
| |
|
||||||||| ||||| ||||| |
|
|
| T |
45049934 |
gatgcatttattcttttctct |
45049914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 158; Significance: 6e-84; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 83 - 426
Target Start/End: Complemental strand, 10896967 - 10896605
Alignment:
| Q |
83 |
tctttctctcattttctctcatctccatgagttggtgtgttttcgatttgatctcccatctcctcagttatctnnnnnnnn--tgaaggttatagatttg |
180 |
Q |
| |
|
|||||||||||| | ||| |||||||||||||| ||| ||||||||||||| |||||||||||||||||||| |||||||| || ||||| |
|
|
| T |
10896967 |
tctttctctcatatgctcccatctccatgagttagtgagttttcgatttgacctcccatctcctcagttatccaaaaaaaaaatgaaggttgtatatttg |
10896868 |
T |
|
| Q |
181 |
ccacttgcttaattttttatgtactatgttcaagcatacatatattgatagacaaaacatggattcctcaagttcaaggcgtgatgtttggaaaaaggca |
280 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||| |||||| |||||| ||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
10896867 |
ttacttgcttagttttttaggtactatgttcaagcatatgtatattaatagacgaaacatggattcctcaagttcaatgcatgatgtttggaaaaaggca |
10896768 |
T |
|
| Q |
281 |
aa--------------catgactttgatcatagctct--ataacaacaaaatatcaataatcaataaaattgataaacctcatttccaaaaacaaatact |
364 |
Q |
| |
|
|| |||||| |||||||||||||| ||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
10896767 |
aaaactttatcttatacatgaccttgatcatagctctctatagcaacaaaatatcaataatcaataaaattaataaacatcatttccaaaaacaaatact |
10896668 |
T |
|
| Q |
365 |
acat-gaaaataaatacttcatatataatctaattgatatgtgatgcatttcttcttctctct |
426 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10896667 |
acataaaaaataaatacttcatatatattctaattgatatgtgatgcatttcttcttttctct |
10896605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 6e-44; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 325579 - 325392
Alignment:
| Q |
19 |
gatattgattaagttaagttggtcatgtgatgaccatgctgccgtcaagtctatgttttggtcatctttctctcattttctctcatctccatgagttggt |
118 |
Q |
| |
|
|||||||||||||||||| |||||| | |||||||||| |||||||||||||| ||||||||||| |||||||||||| ||| ||| |||||||||| || |
|
|
| T |
325579 |
gatattgattaagttaaggtggtcacgcgatgaccatgttgccgtcaagtctaagttttggtcatttttctctcatttgctcccatttccatgagttagt |
325480 |
T |
|
| Q |
119 |
gtgttttcgatttgatctcccatctcctcagttatctnnnnnnnntgaaggttatagatttgccacttgcttaattttttatgtactatgt |
209 |
Q |
| |
|
||||||||||| ||| ||| ||||||||||||||||| |||||||||||||||||| ||| |||| ||||||||||||||||| |
|
|
| T |
325479 |
gtgttttcgatatgacctctcatctcctcagttatct-taaaaaatgaaggttatagatttgctact--cttagttttttatgtactatgt |
325392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 29 - 187
Target Start/End: Complemental strand, 14236539 - 14236382
Alignment:
| Q |
29 |
aagttaagttggtcatgtgatgaccatgctgccgtcaagtctatgttttggtcatctttctctcattttctctcatctccatgagttggtgtgttttcga |
128 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||| |||||||||||||| |||||||||||| |
|
|
| T |
14236539 |
aagttaagatggtcacgtgatgaccatgctgccgtcaagtctaagttt-ggtcatctttctctcatttgctcccatctccatgagttagtgtgttttcga |
14236441 |
T |
|
| Q |
129 |
tttgatctcccatctcctcagttatctnnnnnnnntgaaggttatagatttgccacttg |
187 |
Q |
| |
|
||| | ||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
14236440 |
tttcacctcccatctcctcagttatctaaaaaaaatgaaggttatagatttgctacttg |
14236382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 373 - 426
Target Start/End: Complemental strand, 30160942 - 30160889
Alignment:
| Q |
373 |
ataaatacttcatatataatctaattgatatgtgatgcatttcttcttctctct |
426 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
30160942 |
ataaatccttcatatatattctaattgatacgtgatgcatttcttcttttctct |
30160889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 20795003 - 20795054
Alignment:
| Q |
375 |
aaatacttcatatataatctaattgatatgtgatgcatttcttcttctctct |
426 |
Q |
| |
|
|||| ||||||| ||| ||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
20795003 |
aaatccttcatacatattctaattgatacgtgatgcatttcttcttttctct |
20795054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 9e-43; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 22820789 - 22820653
Alignment:
| Q |
19 |
gatattgattaagttaagttggtcatgtgatgaccatgctgccgtcaagtctatgttttggtcatctttctctcattttctctcatctccatgagttggt |
118 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||| |||||||| ||||| || |
|
|
| T |
22820789 |
gatattgattaagttaaggtggtcacgtgatgaccatgctgccgtcaagtctaagttttggtcctctttctctcatttgctcccatctccacgagttagt |
22820690 |
T |
|
| Q |
119 |
gtgttttcgatttgatctcccatctcctcagttatct |
155 |
Q |
| |
|
||||||| ||||||| |||| ||||||| |||||||| |
|
|
| T |
22820689 |
gtgtttttgatttgacctccaatctccttagttatct |
22820653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 355 - 412
Target Start/End: Complemental strand, 22820573 - 22820516
Alignment:
| Q |
355 |
aacaaatactacatgaaaataaatacttcatatataatctaattgatatgtgatgcat |
412 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
22820573 |
aacaaatactacataaaaataaatacttcatatatattctaattgatatgtgatgcat |
22820516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 21992264 - 21992315
Alignment:
| Q |
375 |
aaatacttcatatataatctaattgatatgtgatgcatttcttcttctctct |
426 |
Q |
| |
|
|||| |||| |||||| ||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
21992264 |
aaatccttcgtatatattctaattgatacgtgatgcatttcttcttttctct |
21992315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 363 - 426
Target Start/End: Complemental strand, 101573 - 101510
Alignment:
| Q |
363 |
ctacatgaaaataaatacttcatatataatctaattgatatgtgatgcatttcttcttctctct |
426 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
101573 |
ctacataaaaataaatacttcatatatattctaattgatatgtgatgcatttcttcttttctct |
101510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 375 - 426
Target Start/End: Complemental strand, 19095823 - 19095772
Alignment:
| Q |
375 |
aaatacttcatatataatctaattgatatgtgatgcatttcttcttctctct |
426 |
Q |
| |
|
|||| ||||||||||| ||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
19095823 |
aaatccttcatatatattctaattgatacgtgatgcatttcttcttttctct |
19095772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0490 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0490
Description:
Target: scaffold0490; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 375 - 420
Target Start/End: Complemental strand, 9624 - 9579
Alignment:
| Q |
375 |
aaatacttcatatataatctaattgatatgtgatgcatttcttctt |
420 |
Q |
| |
|
|||| ||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
9624 |
aaatccttcatatatattctaattgatacgtgatgcatttcttctt |
9579 |
T |
|
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