View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10701_low_6 (Length: 410)
Name: NF10701_low_6
Description: NF10701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10701_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 19 - 400
Target Start/End: Complemental strand, 46797955 - 46797574
Alignment:
| Q |
19 |
agtacacatagagatagtatccaagtgaaggtgcaatgggtgtcagagaagaaagagcttttttcgggattgaaatgaagttatgtgggcgcgcattcaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46797955 |
agtacacatagagatagtatccaagtgaaggtgcaatgggtgtcagagaagaaagagcttttttcgggattgaaatgaagttatgtgggcgcgcattcaa |
46797856 |
T |
|
| Q |
119 |
aaagaacaccgagtttgaagtttgtattaccaatttgtactataatttcagccttttcagaaaaatgaaaatgcaattttttctgactgagttggtatat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46797855 |
aaagaacaccgagtttgaagtttgtattaccaatttgtactataatttcagccttttcagaaaaatgaaaatgcaattttttctgactgagttggtatat |
46797756 |
T |
|
| Q |
219 |
ttgcggttgagttttatacagaggagacaggtaagcagctattacagcctctcacctaccttttacactctttgtacggtttcaaacttcattttctttc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46797755 |
ttgcggttgagttttatacagaggagacaggtaagcagctattacagcctctcacctaccttttacactctttgtacggtttcaaacttcattttctttc |
46797656 |
T |
|
| Q |
319 |
ggataaaaaccttcatagctagatccataaggatagggttttcaactttttcaggtgtatataactactacaatttcctttg |
400 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46797655 |
ggataaaaaccctcatagctagatccataaggatagggttttcaactttttcaggtgtatataactactacaatttcctttg |
46797574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University