View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10701_low_9 (Length: 321)

Name: NF10701_low_9
Description: NF10701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10701_low_9
NF10701_low_9
[»] chr7 (1 HSPs)
chr7 (20-313)||(45900639-45900932)


Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 20 - 313
Target Start/End: Original strand, 45900639 - 45900932
Alignment:
Q  20 ccaagatcaacacatccatgctcaaatttcaacactattaccgtannnnnnngttcccccttagaaatttgtagcctctaatacgaaccagacgcttgat 119  Q
    |||||||||||||||||||||||||||||||||| ||||||||||       ||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  45900639 ccaagatcaacacatccatgctcaaatttcaacaatattaccgtatttttttgtttccccttagaaatttgtagcctctaatacgaaccagacgcttaat 45900738  T
Q  120 cttcttttgttaattgttgcaggttgcatcaagcagctttcattcagtagcaagtgttggaagctcttctttctgtcgaaaatttcgtggtttcaaactg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45900739 cttcttttgttaattgttgcaggttgcatcaagcagctttcattcagtagcaagtgttggaagctcttctttctgtcgaaaatttcgtggtttcaaactg 45900838  T
Q  220 tggatacttgatagactcaaccttcaacatccaaagcagtttaaccgtcgaaatcacttcaagaatgtgaaaggatcaatttctgattcatctc 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  45900839 tggatacttgatagactcaaccttcaacatccaaagcagtttaactgtcgaaatcacttcaagaatgtgaaaggatcaatttctgattcatctc 45900932  T

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