View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10702_high_10 (Length: 323)
Name: NF10702_high_10
Description: NF10702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10702_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 13 - 308
Target Start/End: Complemental strand, 37935683 - 37935389
Alignment:
| Q |
13 |
agagaaagaaatgatacaaaattatgcaacaactacttgtgtcaaaataaaaattattgaacattttttaagggatttgtttttctttgtgggggaaaca |
112 |
Q |
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| T |
37935683 |
agagaaagaaatgatataaaattatgcaacaactacttgtgtcaaaataaaaattattgaacattttttaaggtatttgtttttctttgtgggggaaaca |
37935584 |
T |
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| Q |
113 |
accccaattccactctacatacatgatgcatccgcacataagtcccttaacgaattctcctaataggaggcacataagtaaggggcttagtaa---gtag |
209 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37935583 |
accccaattccactctacat-------gcatccgcacataagtcccttaacgaattctcctaataggaggcacataagtaaggggcttagtaagtagtag |
37935491 |
T |
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| Q |
210 |
aattttgagatgagggg-tttgtttttaatagcaaataacatgttttattgaataagatgtgataaatataa--gtggtacaagatccatacaatatgat |
306 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
37935490 |
aattttgagatgaggggttttgtttttaatagcaaataacatgttttattgaataagatgtgataaatataagtgtggtacaagatccatacaatatgat |
37935391 |
T |
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