View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10702_high_14 (Length: 275)

Name: NF10702_high_14
Description: NF10702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10702_high_14
NF10702_high_14
[»] chr7 (8 HSPs)
chr7 (1-171)||(42513062-42513232)
chr7 (21-171)||(30456307-30456456)
chr7 (21-171)||(30452702-30452847)
chr7 (49-161)||(11206499-11206611)
chr7 (4-172)||(41712277-41712443)
chr7 (1-160)||(49017107-49017266)
chr7 (1-95)||(38572287-38572381)
chr7 (47-161)||(6102928-6103043)
[»] chr3 (8 HSPs)
chr3 (1-171)||(36326472-36326640)
chr3 (1-110)||(30912035-30912144)
chr3 (75-161)||(14029381-14029467)
chr3 (1-122)||(55211737-55211854)
chr3 (4-102)||(32414719-32414821)
chr3 (35-124)||(33328218-33328306)
chr3 (132-171)||(30912146-30912185)
chr3 (115-157)||(32414847-32414889)
[»] chr6 (6 HSPs)
chr6 (1-173)||(4834699-4834871)
chr6 (1-171)||(7415619-7415789)
chr6 (1-171)||(7422627-7422797)
chr6 (1-171)||(7426566-7426736)
chr6 (1-171)||(33242829-33242998)
chr6 (69-171)||(13886589-13886691)
[»] chr5 (6 HSPs)
chr5 (1-172)||(8123508-8123679)
chr5 (44-172)||(41709523-41709651)
chr5 (1-161)||(671442-671602)
chr5 (21-171)||(24108697-24108848)
chr5 (198-244)||(4287571-4287617)
chr5 (91-171)||(10321869-10321949)
[»] chr1 (5 HSPs)
chr1 (21-171)||(23405475-23405625)
chr1 (1-171)||(18583886-18584056)
chr1 (81-171)||(21075941-21076031)
chr1 (81-161)||(9893803-9893883)
chr1 (44-161)||(13087701-13087817)
[»] chr8 (2 HSPs)
chr8 (30-171)||(44761976-44762117)
chr8 (30-171)||(44765283-44765424)
[»] chr4 (6 HSPs)
chr4 (21-171)||(27387620-27387770)
chr4 (39-171)||(55322334-55322467)
chr4 (30-171)||(36050673-36050813)
chr4 (30-171)||(36053932-36054072)
chr4 (47-161)||(24733642-24733756)
chr4 (13-61)||(20441029-20441077)
[»] chr2 (5 HSPs)
chr2 (67-171)||(31211859-31211963)
chr2 (21-155)||(45327420-45327554)
chr2 (1-63)||(31211669-31211731)
chr2 (88-161)||(31193244-31193317)
chr2 (134-171)||(40400909-40400946)


Alignment Details
Target: chr7 (Bit Score: 131; Significance: 5e-68; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 42513232 - 42513062
Alignment:
Q  1 ttgagtatgttggggtgcacttatgttattatgagtatgcacaagtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaatt 100  Q
    ||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||    
T  42513232 ttgagtatgttagggtacacttatcttattatgagtatgcacaagtctatataagcattgtatgctttattatgagaatcaatgaaaaatataatgaatt 42513133  T
Q  101 ttctttctcttttctctagtttctccctctgaattctggagtgtgatccctactcgaattgaatcgtatca 171  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||  ||||||||    
T  42513132 ttctttctcttttctctagtttctccctctaatttctggagtgtgatccctactcgaattgggtcgtatca 42513062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 21 - 171
Target Start/End: Original strand, 30456307 - 30456456
Alignment:
Q  21 ttatgttattatgagtatgcacaagtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttctcttttctctagt 120  Q
    |||| |||||||||||||||| ||||||||||||||||| ||||  |||| || |||| ||||||| |||||||||||||||||||||||||||||||||    
T  30456307 ttatcttattatgagtatgca-aagtctatataagcattatatgccttatgattagaacgaatgaaaaatataatgaattttctttctcttttctctagt 30456405  T
Q  121 ttctccctctgaattctggagtgtgatccctactcgaattgaatcgtatca 171  Q
    |||||||||| ||||||||||||||||||||||||||||||  ||||||||    
T  30456406 ttctccctctaaattctggagtgtgatccctactcgaattgggtcgtatca 30456456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 21 - 171
Target Start/End: Original strand, 30452702 - 30452847
Alignment:
Q  21 ttatgttattatgagtatgcacaagtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttctcttttctctagt 120  Q
    |||| |||||||||||||||| |||||||||||    |||||||  |||| || |||| ||||||| |||||||||||||||||||||||||||||||||    
T  30452702 ttatcttattatgagtatgca-aagtctatata----ttgtatgccttatgattagaacgaatgaaaaatataatgaattttctttctcttttctctagt 30452796  T
Q  121 ttctccctctgaattctggagtgtgatccctactcgaattgaatcgtatca 171  Q
    |||||||||| ||||||||||||||||||||||||||||||  ||||||||    
T  30452797 ttctccctctaaattctggagtgtgatccctactcgaattgggtcgtatca 30452847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 49 - 161
Target Start/End: Original strand, 11206499 - 11206611
Alignment:
Q  49 atataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttctcttttctctagtttctccctctgaattctggagtgtgatc 148  Q
    |||||| |||||||||  ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11206499 atataaacattgtatgccttattatgagaatcaatgaaaaatataatgaattttctttctcttttctctagtttctccctctaaattctggagtgtgatc 11206598  T
Q  149 cctactcgaattg 161  Q
     ||||||||||||    
T  11206599 tctactcgaattg 11206611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 4 - 172
Target Start/End: Original strand, 41712277 - 41712443
Alignment:
Q  4 agtatgttggggtgcacttatgttattatgagtatgcacaagtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttc 103  Q
    |||||||| |||||||||||| |||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||  || ||||  ||||| |    
T  41712277 agtatgttagggtgcacttattttattatgagtaggcacaagtctatataagtattgtatgtcttattatgagaatgaatga--aaaataacaaatttcc 41712374  T
Q  104 tttctcttttctctagtttctccctctgaa-ttctggagtgtgatccctactcgaattgaatcgtatcaa 172  Q
    ||||| || |||||||||| || |||| || || ||||||||||||| |||||||||||  |||||||||    
T  41712375 tttcttttgtctctagttt-tctctcttaatttttggagtgtgatccttactcgaattgggtcgtatcaa 41712443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 49017107 - 49017266
Alignment:
Q  1 ttgagtatgttggggtgcacttatgttattatgagtatgcacaagtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaatt 100  Q
    |||||||||||  | ||||||||| ||||||||| ||| ||||||| | |||||||||||||||  ||||||||||| | |||||| ||||||||  |||    
T  49017107 ttgagtatgttatgatgcacttatcttattatgactatccacaagtttgtataagcattgtatgccttattatgagacttaatgaaaaatataatatatt 49017206  T
Q  101 ttctttctcttttctctagtttctccctctgaattctggagtgtgatccctactcgaatt 160  Q
    |||||||| || ||||||||||||| |||| | || |||||||||||||||| |||||||    
T  49017207 ttctttcttttatctctagtttctctctctaatttatggagtgtgatccctattcgaatt 49017266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 38572381 - 38572287
Alignment:
Q  1 ttgagtatgttggggtgcacttatgttattatgagtatgcacaagtctatataagcattgtatgttttattatgagaatgaatgaataatataat 95  Q
    ||||||| ||| |||| ||||||| ||||||||| ||||| ||||||||||||| |||||||||  ||||||||||||| ||| || ||||||||    
T  38572381 ttgagtaagttagggtacacttatcttattatgaatatgcccaagtctatataaacattgtatgccttattatgagaattaataaaaaatataat 38572287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 47 - 161
Target Start/End: Original strand, 6102928 - 6103043
Alignment:
Q  47 ctatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttcttt-ctcttttctctagtttctccctctgaa-ttctggagtgt 144  Q
    ||||||||||||||||| ||| || || ||||| |||||| ||||||||||||||| ||| || || |||||||||| || |||| || || ||||||||    
T  6102928 ctatataagcattgtatctttcatgattagaatcaatgaaaaatataatgaattttttttgcttttatctctagttt-tctctcttaatttatggagtgt 6103026  T
Q  145 gatccctactcgaattg 161  Q
    ||| |||||||||||||    
T  6103027 gattcctactcgaattg 6103043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 36326472 - 36326640
Alignment:
Q  1 ttgagtatgttggggtgcacttatgttattatgagtatgcacaagtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaatt 100  Q
    ||||||||||| ||||||||||| |||||||||||||||||  ||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||    
T  36326472 ttgagtatgttagggtgcacttaggttattatgagtatgca--agtctatataagcattgtatgctttattatgagaatcaatgaaaaatataatgaatt 36326569  T
Q  101 ttctttctcttttctctagtttctccctctgaattctggagtgtgatccctactcgaattgaatcgtatca 171  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||    
T  36326570 ttctttctcttttctctagtttctccctctaaattctggagtgtgatccctactcgaattgggtcgtatca 36326640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 30912035 - 30912144
Alignment:
Q  1 ttgagtatgttggggtgcacttatgttattatgagtatgcacaagtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaatt 100  Q
    ||||||||||| |||||||||||| ||||| |||||||||||||||||||||||| ||||||||  ||||||||||||| |||||| |||||||||||||    
T  30912035 ttgagtatgttagggtgcacttattttattgtgagtatgcacaagtctatataagtattgtatgccttattatgagaatcaatgaaaaatataatgaatt 30912134  T
Q  101 ttctttctct 110  Q
    ||||||||||    
T  30912135 ttctttctct 30912144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 75 - 161
Target Start/End: Original strand, 14029381 - 14029467
Alignment:
Q  75 agaatgaatgaataatataatgaattttctttctcttttctctagtttctccctctgaattctggagtgtgatccctactcgaattg 161  Q
    ||||| |||||| |||||||||||||| |||||| || ||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  14029381 agaatcaatgaaaaatataatgaatttcctttcttttatctctagtttctcactctaaattctggagtgtgatccctactcgaattg 14029467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 55211854 - 55211737
Alignment:
Q  1 ttgagtatgttggggtgcacttatgttattatgagtatgcacaagtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaatt 100  Q
    ||||||||||| |||||||||||| ||||||||| |||||||||||||||||     |||||||  ||||||||||||| |||||| |||||||||||||    
T  55211854 ttgagtatgttagggtgcacttatcttattatgaatatgcacaagtctatat-----ttgtatgccttattatgagaatcaatgaaaaatataatgaatt 55211760  T
Q  101 t-tctttctcttttctctagttt 122  Q
    | | | |||||| ||||||||||    
T  55211759 tatttctctcttatctctagttt 55211737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 102
Target Start/End: Original strand, 32414719 - 32414821
Alignment:
Q  4 agtatgttggggtgcacttatgttattatgagtatgcacaa----gtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaat 99  Q
    ||||||||  ||||||||||| ||||| ||||| |||||||    |||||||||| |||||||||  |||||| |||||| ||| || |||||||||| |    
T  32414719 agtatgttatggtgcacttatcttattttgagtttgcacaaacaagtctatataaacattgtatgccttattacgagaatcaataaaaaatataatgatt 32414818  T
Q  100 ttt 102  Q
    |||    
T  32414819 ttt 32414821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 33328218 - 33328306
Alignment:
Q  35 gtatgcacaagtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttctcttttctctagtttct 124  Q
    ||||||| |||||| ||||||||||||||| ||||| || ||||  ||||||  ||||||| ||||| |||||| |||||| ||||||||    
T  33328218 gtatgcataagtctgtataagcattgtatgctttataattagaaccaatgaaagatataatcaatttcctttcttttttct-tagtttct 33328306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 171
Target Start/End: Original strand, 30912146 - 30912185
Alignment:
Q  132 aattctggagtgtgatccctactcgaattgaatcgtatca 171  Q
    |||||||||||||||||| |||||||||||| ||||||||    
T  30912146 aattctggagtgtgatccgtactcgaattgagtcgtatca 30912185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 157
Target Start/End: Original strand, 32414847 - 32414889
Alignment:
Q  115 tctagtttctccctctgaattctggagtgtgatccctactcga 157  Q
    ||||||||||| |||| |||| |||||||||||||||||||||    
T  32414847 tctagtttctctctctaaattttggagtgtgatccctactcga 32414889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 121; Significance: 5e-62; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 4834699 - 4834871
Alignment:
Q  1 ttgagtatgttggggtgcacttatgttattatgagtatgcacaagtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaatt 100  Q
    ||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||  | ||||| ||||| |||||| |||||||||||||    
T  4834699 ttgagtatgttagggtgcacttatcttattatgagtatgcataagtctatataagcattgtatgcctcattattagaatcaatgaaaaatataatgaatt 4834798  T
Q  101 ttctttctcttttctctagtttctccctctgaattctggagtgtgatccctactcgaattgaatcgtatcaac 173  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||  ||||||||||    
T  4834799 ttctttctcttttctctagtttctccctctaaattctggagtgtgatccctactcaaattgggtcgtatcaac 4834871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 7415619 - 7415789
Alignment:
Q  1 ttgagtatgttggggtgcacttatgttattatgagtatgcacaagtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaatt 100  Q
    |||||||||||  ||||||||||| ||||||||||||  || ||||||||||||||||||||||  ||||||||||||| |||||| |||||||||||||    
T  7415619 ttgagtatgttatggtgcacttatcttattatgagtacacataagtctatataagcattgtatgccttattatgagaatcaatgaaaaatataatgaatt 7415718  T
Q  101 ttctttctcttttctctagtttctccctctgaattctggagtgtgatccctactcgaattgaatcgtatca 171  Q
    ||||||||||||||||||||||||| |||| | |||||||||||||||||||||| | ||| |||||||||    
T  7415719 ttctttctcttttctctagtttctctctctaatttctggagtgtgatccctactcaagttggatcgtatca 7415789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 7422627 - 7422797
Alignment:
Q  1 ttgagtatgttggggtgcacttatgttattatgagtatgcacaagtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaatt 100  Q
    |||||||||||  ||||||||||| |||||| |||||  || ||||||||||||||||||||||  ||||||||||||| |||||| |||||||||||||    
T  7422627 ttgagtatgttatggtgcacttatcttattaagagtacacataagtctatataagcattgtatgccttattatgagaatcaatgaaaaatataatgaatt 7422726  T
Q  101 ttctttctcttttctctagtttctccctctgaattctggagtgtgatccctactcgaattgaatcgtatca 171  Q
    ||||||||||||||||||||||||| |||| | |||| |||||||||||||||||||||||  ||||||||    
T  7422727 ttctttctcttttctctagtttctctctctaatttcttgagtgtgatccctactcgaattgggtcgtatca 7422797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 7426566 - 7426736
Alignment:
Q  1 ttgagtatgttggggtgcacttatgttattatgagtatgcacaagtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaatt 100  Q
    |||||||||||  ||||||||||| |||||| |||||  || |||||||||||| |||||||||  ||||||||||||| |||||| |||||||||||||    
T  7426566 ttgagtatgttatggtgcacttatcttattaagagtacacataagtctatataaacattgtatgccttattatgagaatcaatgaaaaatataatgaatt 7426665  T
Q  101 ttctttctcttttctctagtttctccctctgaattctggagtgtgatccctactcgaattgaatcgtatca 171  Q
    |||||||||||||||||| ||||||  ||| | ||||||||||||||||||||||||||||  ||||||||    
T  7426666 ttctttctcttttctctaatttctctttctaatttctggagtgtgatccctactcgaattgggtcgtatca 7426736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 33242829 - 33242998
Alignment:
Q  1 ttgagtatgttggggtgcacttatgttattatgagtatgcacaagtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaatt 100  Q
    ||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||| |||||||||||||    
T  33242829 ttgagtatgttagg-tgcacttatcttattatgagtatgcacaagtctatataagcattgtatgccttattatgagaatcaatgaaaaatataatgaatt 33242927  T
Q  101 ttctttctcttttctctagtttctccctctgaattctggagtgtgatccctactcgaattgaatcgtatca 171  Q
    |  ||||| || | ||||||||||| |||| | ||||||||||||||| ||||||||||||  ||||||||    
T  33242928 tcttttcttttatttctagtttctctctctaatttctggagtgtgatctctactcgaattgggtcgtatca 33242998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 69 - 171
Target Start/End: Original strand, 13886589 - 13886691
Alignment:
Q  69 attatgagaatgaatgaataatataatgaattttctttctcttttctctagtttctccctctgaattctggagtgtgatccctactcgaattgaatcgta 168  Q
    ||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||  |||||    
T  13886589 attattagaatcaatgaaaaatataatgaattttctttctcttttctctagtttctccctctaaattctggagtgtgatccctactcaaattgggtcgta 13886688  T
Q  169 tca 171  Q
    |||    
T  13886689 tca 13886691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 8123508 - 8123679
Alignment:
Q  1 ttgagtatgttggggtgcacttatgttattatgagtatgcacaagtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaatt 100  Q
    ||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||    
T  8123508 ttgagtatgttagggtacacttatcttattatgagtatgcacaagtctatataagcattgtatgctttattatgagaatcaatgaaaaatataatgaatt 8123607  T
Q  101 ttctttctcttttctctagtttctccctctgaattctggagtgtgatccctactcgaattgaatcgtatcaa 172  Q
    ||||||||||||||| || ||||||||||| | ||||| |||||||||| |||||||||||  |||||||||    
T  8123608 ttctttctcttttctttaatttctccctctaatttctgaagtgtgatccatactcgaattgggtcgtatcaa 8123679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 44 - 172
Target Start/End: Original strand, 41709523 - 41709651
Alignment:
Q  44 agtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttctcttttctctagtttctccctctgaattctggagtg 143  Q
    ||||||||||| |||||||||  ||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  41709523 agtctatataaacattgtatgccttattatgagaatcaatgaaaaatataatgaattttctttctcttttctatagtttctccctctaaattctggagtg 41709622  T
Q  144 tgatccctactcgaattgaatcgtatcaa 172  Q
    ||||| ||||||||||||  |||||||||    
T  41709623 tgatctctactcgaattgggtcgtatcaa 41709651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 671442 - 671602
Alignment:
Q  1 ttgagtatgttggggtgcacttatgttattatgagtatgcacaagtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaatt 100  Q
    ||||||| ||| |||| ||||||| ||||||||||||||||||||| ||||||| |||||||||  ||||||||||||| |||||| |||||||||||||    
T  671442 ttgagtaggttagggtacacttatcttattatgagtatgcacaagtttatataatcattgtatgccttattatgagaattaatgaaaaatataatgaatt 671541  T
Q  101 ttctttctcttttctctag-tttctccctctgaattctggagtgtgatccctactcgaattg 161  Q
    |||||||| || ||||||| |||||| || | | ||||| ||||||||||| ||||||||||    
T  671542 ttctttcttttatctctagctttctctct-taatttctgaagtgtgatcccaactcgaattg 671602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 21 - 171
Target Start/End: Original strand, 24108697 - 24108848
Alignment:
Q  21 ttatgttattatgagtatgca-caagtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttctcttttctctag 119  Q
    |||| |||||||||||||||| |||||||||||||||||||||||| |||| || ||||  |||||| |||||||||||||| ||||   || |||||||    
T  24108697 ttattttattatgagtatgcaacaagtctatataagcattgtatgtcttatgattagaaccaatgaaaaatataatgaatttccttttgtttgtctctag 24108796  T
Q  120 -tttctccctctgaattctggagtgtgatccctactcgaattgaatcgtatca 171  Q
     ||||| ||| | | ||||||||||||||||||||||||||||  ||||||||    
T  24108797 ttttcttcct-taatttctggagtgtgatccctactcgaattgggtcgtatca 24108848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 198 - 244
Target Start/End: Original strand, 4287571 - 4287617
Alignment:
Q  198 cttgctccctaaaactatattcttctgttttgtcatctctctgtgct 244  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  4287571 cttgctccctaaaactaaattcttctgttttgtcatctctctgtgct 4287617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 91 - 171
Target Start/End: Complemental strand, 10321949 - 10321869
Alignment:
Q  91 ataatgaattttctttctcttttctctagtttctccctctgaattctggagtgtgatccctactcgaattgaatcgtatca 171  Q
    ||||||||||| ||||||||| ||||||| || || |||| |||| ||||||||||||||||||| |||||  ||||||||    
T  10321949 ataatgaatttcctttctcttatctctagcttatctctctaaattatggagtgtgatccctactcaaattgggtcgtatca 10321869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 6e-49; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 21 - 171
Target Start/End: Complemental strand, 23405625 - 23405475
Alignment:
Q  21 ttatgttattatgagtatgcacaagtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttctcttttctctagt 120  Q
    |||| ||| |||| |||||||||||||||| ||| |||||||||  ||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  23405625 ttatcttactatgtgtatgcacaagtctatctaaacattgtatgccttattatgagaatcaatgaaaaatataatgaattttctttctcttttctctagt 23405526  T
Q  121 ttctccctctgaattctggagtgtgatccctactcgaattgaatcgtatca 171  Q
    |||||||||| ||||||||||||||||||||||| ||||||  ||||||||    
T  23405525 ttctccctctaaattctggagtgtgatccctacttgaattgggtcgtatca 23405475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 18584056 - 18583886
Alignment:
Q  1 ttgagtatgttggggtgcacttatgttattatgagtatgcacaagtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaatt 100  Q
    ||||||||||| ||||||| ||||  |||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||| ||||||    
T  18584056 ttgagtatgttagggtgcagttatcgtattataagtatgcacaagtctatataagcattgtatgctttattatgagaatcaatgaaaaatatactgaatt 18583957  T
Q  101 ttctttctcttttctctagtttctccctctgaa-ttctggagtgtgatccctactcgaattgaatcgtatca 171  Q
    | |||||| || |||||||||| || |||| || ||||||||||| ||| ||||||||||||  ||||||||    
T  18583956 tcctttcttttatctctagttt-tctctcttaatttctggagtgtaatctctactcgaattgggtcgtatca 18583886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 21076031 - 21075941
Alignment:
Q  81 aatgaataatataatgaattttctttctcttttctctagtttctccctctgaattctggagtgtgatccctactcgaattgaatcgtatca 171  Q
    |||||| |||||| ||||||| |||||| || ||| ||||||||| | || ||||||||||||| |||||||||||||||  |||||||||    
T  21076031 aatgaaaaatatagtgaatttcctttcttttatctgtagtttctctcgctaaattctggagtgtcatccctactcgaatttgatcgtatca 21075941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 161
Target Start/End: Original strand, 9893803 - 9893883
Alignment:
Q  81 aatgaataatataatgaattttctttctcttttctctagtttctccctctgaattctggagtgtgatccctactcgaattg 161  Q
    |||||| ||||||||||||||||||||| |  ||||||||||||  | || |||| || |||||||| ||||||| |||||    
T  9893803 aatgaaaaatataatgaattttctttctttcatctctagtttctttcactaaattatgcagtgtgatacctactcaaattg 9893883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 161
Target Start/End: Original strand, 13087701 - 13087817
Alignment:
Q  44 agtctatataagcattgtatgttttattatgagaatgaatg-aataatataatgaattttctttctcttttctctagtttctccctctgaattctggagt 142  Q
    |||||||||||| ||||||||  |||||||||||||||||| || |||| |||||||||  ||||| || ||| ||    ||| |||  |||||||||||    
T  13087701 agtctatataagtattgtatgccttattatgagaatgaatgaaaaaatacaatgaatttattttcttttatcttta--acctctctcgaaattctggagt 13087798  T
Q  143 gtgatccctactcgaattg 161  Q
    ||||| |||| ||||||||    
T  13087799 gtgatacctattcgaattg 13087817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 30 - 171
Target Start/End: Original strand, 44761976 - 44762117
Alignment:
Q  30 tatgagtatgcacaagtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttctcttttctctagtttctccctc 129  Q
    |||| |||||||||||||||||||| |||||||||  ||||||||| ||| |||||| ||||||||||||||| |||||||||||| |||||||||||||    
T  44761976 tatgtgtatgcacaagtctatataaacattgtatgccttattatgaaaatcaatgaaaaatataatgaattttttttctcttttctatagtttctccctc 44762075  T
Q  130 tgaattctggagtgtgatccctactcgaattgaatcgtatca 171  Q
    | ||||||||||||||||||||||||||||||  ||||||||    
T  44762076 taaattctggagtgtgatccctactcgaattgggtcgtatca 44762117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 30 - 171
Target Start/End: Original strand, 44765283 - 44765424
Alignment:
Q  30 tatgagtatgcacaagtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttctcttttctctagtttctccctc 129  Q
    |||| |||||||||||||||||||| ||||||||   ||||||||| ||| |||||| |||||||||||||||||||||||||||| |||||||||||||    
T  44765283 tatgtgtatgcacaagtctatataaacattgtattccttattatgaaaatcaatgaaaaatataatgaattttctttctcttttctatagtttctccctc 44765382  T
Q  130 tgaattctggagtgtgatccctactcgaattgaatcgtatca 171  Q
    | ||||||||||||| ||||||||||||||||  ||||||||    
T  44765383 taaattctggagtgtaatccctactcgaattgggtcgtatca 44765424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 171
Target Start/End: Original strand, 27387620 - 27387770
Alignment:
Q  21 ttatgttattatgagtatgcacaagtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttctcttttctctagt 120  Q
    |||| |||||| ||| ||||||||||||||||||||||||||||  | ||||| || | ||||||| ||||||||||||||  ||||  |  ||||||||    
T  27387620 ttatcttattacgaggatgcacaagtctatataagcattgtatgcctcattattagcaggaatgaaaaatataatgaatttcttttccttcatctctagt 27387719  T
Q  121 ttctccctctgaattctggagtgtgatccctactcgaattgaatcgtatca 171  Q
    |||||||||| ||||||||||||||||||||||||||||||  ||||||||    
T  27387720 ttctccctctaaattctggagtgtgatccctactcgaattgggtcgtatca 27387770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 39 - 171
Target Start/End: Complemental strand, 55322467 - 55322334
Alignment:
Q  39 gcacaagtctatataagcattgtatgttttattatgagaatgaatgaataata-taatgaattttctttctcttttctctagtttctccctctgaattct 137  Q
    ||||||||||||||||||||||||||  | ||||| || ||||||||| |||| |||||||||| |||||| || ||||||| |||| | ||| ||||||    
T  55322467 gcacaagtctatataagcattgtatgcctcattattaggatgaatgaaaaataataatgaatttcctttcttttatctctagcttctacttctaaattct 55322368  T
Q  138 ggagtgtgatccctactcgaattgaatcgtatca 171  Q
    ||||||||||||||||||||||||  ||||||||    
T  55322367 ggagtgtgatccctactcgaattgggtcgtatca 55322334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 30 - 171
Target Start/End: Original strand, 36050673 - 36050813
Alignment:
Q  30 tatgagtatgcacaagtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttctcttttctctagtttctccctc 129  Q
    |||| |||||||||||||||||||| |||||||||  ||||||||||    |||||| ||||||||||||||  ||||| || |||||||||| || ||     
T  36050673 tatgtgtatgcacaagtctatataaacattgtatgccttattatgag-ggaaatgaaaaatataatgaatttcttttcttttatctctagttt-tctctt 36050770  T
Q  130 tgaa-ttctggagtgtgatccctactcgaattgaatcgtatca 171  Q
    | || || |||||||||||||||||||||||||  ||||||||    
T  36050771 ttaatttttggagtgtgatccctactcgaattgggtcgtatca 36050813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 30 - 171
Target Start/End: Original strand, 36053932 - 36054072
Alignment:
Q  30 tatgagtatgcacaagtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttctcttttctctagtttctccctc 129  Q
    |||| |||||||||||||||||||| |||||||||  ||||||||||    |||||| ||||||||||||||  ||||| || |||||||||| || ||     
T  36053932 tatgtgtatgcacaagtctatataaacattgtatgccttattatgag-ggaaatgaaaaatataatgaatttcttttcttttatctctagttt-tctctt 36054029  T
Q  130 tgaa-ttctggagtgtgatccctactcgaattgaatcgtatca 171  Q
    | || || |||||||||||||||||||||||||  ||||||||    
T  36054030 ttaatttttggagtgtgatccctactcgaattgggtcgtatca 36054072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 47 - 161
Target Start/End: Original strand, 24733642 - 24733756
Alignment:
Q  47 ctatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttctcttttctctagtttctccctctgaat-tctggagtgtg 145  Q
    ||||||||||||||||||||| || || |||| ||||||| |||||||||||||| |||||| || | |||||||| || |||| ||| |||  ||||||    
T  24733642 ctatataagcattgtatgtttcatgattagaaggaatgaaaaatataatgaatttcctttcttttatatctagttt-tctctcttaatatctaaagtgtg 24733740  T
Q  146 atccctactcgaattg 161  Q
    ||||||||| ||||||    
T  24733741 atccctacttgaattg 24733756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 20441077 - 20441029
Alignment:
Q  13 gggtgcacttatgttattatgagtatgcacaagtctatataagcattgt 61  Q
    |||||||||||| ||||||||||||||||||||||| || |||||||||    
T  20441077 gggtgcacttatcttattatgagtatgcacaagtctgtacaagcattgt 20441029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 8e-27; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 67 - 171
Target Start/End: Original strand, 31211859 - 31211963
Alignment:
Q  67 ttattatgagaatgaatgaataatataatgaattttctttctcttttctctagtttctccctctgaa-ttctggagtgtgatccctactcgaattgaatc 165  Q
    ||||||||||||| |||||| ||||||||||||||||||||| || |||||||||| || |||| || |||||||||||||||||||||||||||| |||    
T  31211859 ttattatgagaatcaatgaaaaatataatgaattttctttcttttatctctagttt-tctctcttaatttctggagtgtgatccctactcgaattggatc 31211957  T
Q  166 gtatca 171  Q
    ||||||    
T  31211958 gtatca 31211963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 155
Target Start/End: Complemental strand, 45327554 - 45327420
Alignment:
Q  21 ttatgttattatgagtatgcacaagtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttctcttttctctagt 120  Q
    |||| ||| |||| ||||||||||||||||||||||||||||||| ||||||||||||  |||||| |||||||| |||||  ||||| || |||||| |    
T  45327554 ttatcttactatgtgtatgcacaagtctatataagcattgtatgtcttattatgagaaaaaatgaaaaatataataaatttcttttcttttatctctaat 45327455  T
Q  121 ttctccctctgaa-ttctggagtgtgatccctactc 155  Q
    || || |||| || ||||||||||||||||||||||    
T  45327454 tt-tctctcttaatttctggagtgtgatccctactc 45327420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 31211669 - 31211731
Alignment:
Q  1 ttgagtatgttggggtgcacttatgttattatgagtatgcacaagtctatataagcattgtat 63  Q
    ||||||||||| | |||||||||| ||| |||||||||||| ||||||||||||| |||||||    
T  31211669 ttgagtatgttagagtgcacttatcttaatatgagtatgcataagtctatataagtattgtat 31211731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 161
Target Start/End: Original strand, 31193244 - 31193317
Alignment:
Q  88 aatataatgaattttctttctcttttctctagtttctccctctgaatt-ctggagtgtgatccctactcgaattg 161  Q
    |||||||| |||||||||||| |  |||||||||| || |||| |||| || |||||||||||||||||||||||    
T  31193244 aatataataaattttctttctttcatctctagttt-tctctcttaatttctagagtgtgatccctactcgaattg 31193317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 171
Target Start/End: Complemental strand, 40400946 - 40400909
Alignment:
Q  134 ttctggagtgtgatccctactcgaattgaatcgtatca 171  Q
    ||||||||||||||||||||||||||||| || |||||    
T  40400946 ttctggagtgtgatccctactcgaattgagtcatatca 40400909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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