View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10702_high_18 (Length: 249)
Name: NF10702_high_18
Description: NF10702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10702_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 8 - 229
Target Start/End: Original strand, 44763784 - 44764005
Alignment:
| Q |
8 |
aggagcagagatcattccatacatggcattacgaatttgaaactttgtagttggtaatggcagcaattttaatacaataaatgatattgcgaatatgaca |
107 |
Q |
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| T |
44763784 |
aggagcagagaccattctatacatggcattacgaatttgaaactttgtagttggtaatggcagcaattttaatacaataaatgatattgcgaatatgaca |
44763883 |
T |
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| Q |
108 |
ttcttttggtcacatgatcaatgcagactaaaatactagtaatttattctatttcataattccagcaatggcataagtaagtagaagaaacctgagaatt |
207 |
Q |
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| T |
44763884 |
ttcttttggtcacatgatcaatgcagactaaaatactagtaatttattctatttcacaattccagcaatggcataagtaagtagaagaaacctgagaatt |
44763983 |
T |
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| Q |
208 |
attccgaacgcccaaattttga |
229 |
Q |
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| T |
44763984 |
attccgaacgcccaaattttga |
44764005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 99 - 229
Target Start/End: Original strand, 28357247 - 28357377
Alignment:
| Q |
99 |
aatatgacattcttttggtcacatgatcaatgcagactaaaatactagtaatttattctatttcataattccagcaatggcataagtaagtagaagaaac |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
28357247 |
aatatgacattcttttggtcacatgatcaatgcagactaaaatactagtaatttattctatttcacaattccagcaatggcataagtaagtagaagaaac |
28357346 |
T |
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| Q |
199 |
ctgagaattattccgaacgcccaaattttga |
229 |
Q |
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| T |
28357347 |
ctgagaattattccgaacgcccaaattttga |
28357377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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