View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10702_high_19 (Length: 248)
Name: NF10702_high_19
Description: NF10702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10702_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 47385631 - 47385869
Alignment:
| Q |
1 |
ttgttgtcttcaatgggagcaatggaggagcaaagagaaccttgtagtccagtattaatagctactaagaaaccaaaaatccataattttccaccacctt |
100 |
Q |
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| T |
47385631 |
ttgttgtcttcaatgggagcaatggaggagcaaagagaaccttgtagtccagtattaatagctactaagaaaccaaaaatccataattttccaccacctt |
47385730 |
T |
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| Q |
101 |
tgacaacgatgagaggatcagaatctcttcgtgttagaccccaccgtgaagatggtaggttagtaattgaagtcacaaaggtcccaccaagtacctcatg |
200 |
Q |
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| T |
47385731 |
tgacaacgatgagaggatcagaatctcttcgtgttagaccccaccgtgaagatggtaggttagtaattgaagtcacaaaggtcccaccaagtacatcatg |
47385830 |
T |
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| Q |
201 |
ttttcaagctgatagaagccatggccgtcttcgtctctg |
239 |
Q |
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| T |
47385831 |
ttttcaagctgatagaagccatggccgtcttcgtctctg |
47385869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 47373298 - 47373064
Alignment:
| Q |
1 |
ttgttgtcttcaatgggagcaatggaggagcaaagagaaccttgtagtccagtattaatagctactaagaaaccaaaaatccataattttccaccacctt |
100 |
Q |
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| T |
47373298 |
ttgttgtcttcaatgggaacaatggag---caaagacaaccttgttctcaagttttagcagctactaagaaagtgaaaactcagaattttccaccacctt |
47373202 |
T |
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| Q |
101 |
tgacaacgatgagaggatcagaatctcttcgtgttagaccccaccgtgaagatggtaggttagtaattgaagtcacaaaggtcccaccaagtacctcatg |
200 |
Q |
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| T |
47373201 |
tgacaaccataagaggatcagaatcttttcatgttagaacccaccgtggagatggaaggttggtgattgaagtcactaaggtcccaccaagtacttcttg |
47373102 |
T |
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| Q |
201 |
ttttcaagctgatagaagccatggccgtcttcgtctct |
238 |
Q |
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| T |
47373101 |
ctttcaagctgatagaagccatggctgtcttcgtctct |
47373064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 20976602 - 20976673
Alignment:
| Q |
145 |
cgtgaagatggtaggttagtaattgaagtcacaaaggtcccaccaagtacctcatgttttcaagctgataga |
216 |
Q |
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| T |
20976602 |
cgtgaagatggaaggttggcaattgaagtaaaaaaggtcccaccaagtacctcatgttttcaagctgataga |
20976673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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