View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10702_high_2 (Length: 486)
Name: NF10702_high_2
Description: NF10702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10702_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 462
Target Start/End: Complemental strand, 41654800 - 41654338
Alignment:
| Q |
1 |
aagacatcgataagaaaagcatataatgaaccttgagtctctgtttactgttcttatcccagaaatgaaaagcaccatcagatccagcagttgcaaaagt |
100 |
Q |
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| T |
41654800 |
aagacatcgataagaaaagcatataatgaaccttgagtctctgtttactgttcttatcccagaaatgaaaagcaccatcagatccagcagttgcaaaagt |
41654701 |
T |
|
| Q |
101 |
gtgatgtacctgaagacaaagac---atcgataagatcttctagaaaagaatattgaatccacaactttccaaat--aatgttgatattataaa-----g |
190 |
Q |
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| T |
41654700 |
gtgatgtacctgaagacaaagacatgatcgataagatcttctagaaaagaatattgaatccacaactttccaaataaaaaatttaactaattaatgttga |
41654601 |
T |
|
| Q |
191 |
tgtattacaggatgaaaatttaaggagttgactgaatatatgtcattattttctctgtggcatctaaaagtaaaattcttgtcttgtaatgcatcatcaa |
290 |
Q |
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| T |
41654600 |
tattttacaggatgaaaatttaacgagttgactgaatatatgtcattattttctctgtggcatctaaaagtaaaattcttgtcttgtaatgcatcatcaa |
41654501 |
T |
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| Q |
291 |
gatggtgtactccaacccttccttctattgagccgacctacagataaaacaatagtacgtcaagaagattttaatggc-----ataaaagcaatacacga |
385 |
Q |
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| T |
41654500 |
gatggtgtactccaacccttccttctattgagccgacctacagaaaaaacaat--------------attttaatggcataatataaaagcaacacacga |
41654415 |
T |
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| Q |
386 |
aactgtttaaattaaaatgacggtgtttgagtttgagtttgagtttgtaatgtacaaaacaaatacagcaaaggata |
462 |
Q |
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| T |
41654414 |
aactgtttaaattaaaatgacggtgtttgagtttgagtttgagtttgtaatgtacaaaacaaatacagcaaaggata |
41654338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 172 - 333
Target Start/End: Original strand, 28816039 - 28816200
Alignment:
| Q |
172 |
taatgttgatattataaagtgtattacaggatgaaaatttaaggagttgactgaatatatgtcattattttctctgtggcatctaaaagtaaaattcttg |
271 |
Q |
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|||| ||||||||||| |||| ||||| ||||| ||||||||||||||||| |||||||| || ||| |||||||||||||| ||||||||||||||||| |
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| T |
28816039 |
taattttgatattatacagtgcattaccggatggaaatttaaggagttgaccgaatatatctcgttactttctctgtggcatttaaaagtaaaattcttg |
28816138 |
T |
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| Q |
272 |
tcttgtaatgcatcatcaagatggtgtactccaacccttccttctattgagccgacctacag |
333 |
Q |
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| T |
28816139 |
ctttgttgtgcatcatcaaggtgatgtactccaacccttccctctattgagccaacctacag |
28816200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 28815873 - 28815982
Alignment:
| Q |
28 |
gaaccttgagtctctgtttactgttcttatcccagaaatgaaaagcaccatcagatccagcagttgcaaaagtgtgatgtacctgaagacaaagacatcg |
127 |
Q |
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|||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
28815873 |
gaaccttgagtctctgtttactgtccttatcccagaaattaaaagcaccgtcagatccagcagttgcaaaagtgtgatgtacctgaaatcaaagaaatca |
28815972 |
T |
|
| Q |
128 |
ataagatctt |
137 |
Q |
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|||||||||| |
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| T |
28815973 |
ataagatctt |
28815982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 111
Target Start/End: Original strand, 1460483 - 1460565
Alignment:
| Q |
29 |
aaccttgagtctctgtttactgttcttatcccagaaatgaaaagcaccatcagatccagcagttgcaaaagtgtgatgtacct |
111 |
Q |
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|||||| || ||||||||||| | ||| ||||| |||| ||||||||||||||| ||||| || ||||| ||||| ||||||| |
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| T |
1460483 |
aaccttaagcctctgtttactatccttgtcccaaaaattaaaagcaccatcagaaccagccgtagcaaatgtgtggtgtacct |
1460565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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