View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10702_high_20 (Length: 248)

Name: NF10702_high_20
Description: NF10702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10702_high_20
NF10702_high_20
[»] chr6 (5 HSPs)
chr6 (4-146)||(17784260-17784402)
chr6 (4-59)||(5064418-5064473)
chr6 (6-58)||(13480455-13480507)
chr6 (4-59)||(20561011-20561065)
chr6 (4-39)||(32337833-32337868)
[»] chr8 (10 HSPs)
chr8 (4-150)||(38599047-38599193)
chr8 (4-181)||(33497456-33497633)
chr8 (4-146)||(33497099-33497241)
chr8 (47-181)||(24377718-24377852)
chr8 (27-181)||(24378837-24378990)
chr8 (4-59)||(7393107-7393162)
chr8 (4-59)||(11478391-11478446)
chr8 (4-58)||(29190243-29190297)
chr8 (4-58)||(37342865-37342919)
chr8 (4-58)||(43866958-43867012)
[»] scaffold0182 (2 HSPs)
scaffold0182 (4-181)||(13217-13394)
scaffold0182 (4-116)||(14283-14394)
[»] chr2 (11 HSPs)
chr2 (4-181)||(20101853-20102029)
chr2 (4-137)||(23206292-23206425)
chr2 (4-137)||(23677896-23678029)
chr2 (4-161)||(23183682-23183838)
chr2 (4-161)||(23594939-23595095)
chr2 (3-181)||(20102985-20103162)
chr2 (4-58)||(16367046-16367100)
chr2 (4-59)||(1150183-1150238)
chr2 (4-58)||(32519402-32519456)
chr2 (4-37)||(19620777-19620810)
chr2 (4-40)||(19607000-19607036)
[»] chr3 (11 HSPs)
chr3 (13-149)||(22736562-22736698)
chr3 (13-149)||(22735451-22735587)
chr3 (13-149)||(44476141-44476277)
chr3 (13-149)||(44481825-44481961)
chr3 (4-58)||(10998120-10998174)
chr3 (4-58)||(11312818-11312872)
chr3 (3-59)||(21300215-21300271)
chr3 (4-56)||(55036918-55036970)
chr3 (4-39)||(22129089-22129124)
chr3 (4-39)||(24576561-24576596)
chr3 (4-58)||(1741470-1741524)
[»] chr7 (6 HSPs)
chr7 (4-149)||(37284192-37284337)
chr7 (4-181)||(37289150-37289327)
chr7 (4-58)||(37563437-37563491)
chr7 (4-37)||(7159197-7159230)
chr7 (4-58)||(43937977-43938031)
chr7 (3-39)||(12931004-12931040)
[»] chr5 (10 HSPs)
chr5 (13-149)||(21972181-21972317)
chr5 (13-149)||(21977889-21978025)
chr5 (4-59)||(14744692-14744747)
chr5 (4-162)||(8654190-8654349)
chr5 (4-58)||(13064656-13064710)
chr5 (4-58)||(20704960-20705014)
chr5 (4-58)||(8323303-8323357)
chr5 (4-58)||(12991035-12991089)
chr5 (4-58)||(25253333-25253387)
chr5 (4-58)||(25317124-25317178)
[»] chr1 (12 HSPs)
chr1 (13-149)||(32619476-32619612)
chr1 (13-149)||(32622228-32622364)
chr1 (4-62)||(2828276-2828334)
chr1 (4-152)||(51935068-51935216)
chr1 (4-58)||(5183589-5183643)
chr1 (4-58)||(29043002-29043056)
chr1 (48-108)||(32238828-32238888)
chr1 (4-58)||(1047451-1047505)
chr1 (4-58)||(2953547-2953601)
chr1 (4-54)||(26953184-26953234)
chr1 (4-37)||(2829523-2829556)
chr1 (4-57)||(25414927-25414980)
[»] scaffold0018 (1 HSPs)
scaffold0018 (13-149)||(73201-73337)
[»] chr4 (9 HSPs)
chr4 (13-149)||(55012961-55013097)
chr4 (6-62)||(54590228-54590284)
chr4 (4-58)||(47862399-47862453)
chr4 (4-59)||(47981882-47981937)
chr4 (4-58)||(13872152-13872206)
chr4 (4-58)||(33294390-33294444)
chr4 (7-37)||(54591560-54591590)
chr4 (3-39)||(26601342-26601378)
chr4 (3-39)||(34238736-34238772)
[»] scaffold0009 (1 HSPs)
scaffold0009 (4-62)||(261084-261142)
[»] scaffold0321 (1 HSPs)
scaffold0321 (6-59)||(10908-10961)


Alignment Details
Target: chr6 (Bit Score: 103; Significance: 2e-51; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 4 - 146
Target Start/End: Complemental strand, 17784402 - 17784260
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagatacatggcaactagcgactggctttttgtcagg 103  Q
    |||||||||||||||||| ||  |||||||||||||||||   || |||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  17784402 tgcaaatattaatcattttaaaattcgtcctaattaaaaaaaattactgaggtggatggtaattagatatgtggcaactagcgactggctttttgtcagg 17784303  T
Q  104 acacatcagcagatggcaattgcaatgacatttttgcccttaa 146  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  17784302 acacgtcagcagatggcaattgcaatgacatttttgcccttaa 17784260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 5064418 - 5064473
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgga 59  Q
    |||||||||||||||||||| |||| |||||||||| |  ||||||||||||||||    
T  5064418 tgcaaatattaatcatttgacttttggtcctaattagatttttttgctgaggtgga 5064473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 13480507 - 13480455
Alignment:
Q  6 caaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 58  Q
    |||||||||||||||||| |||| |||||||||| |  |||||||||||||||    
T  13480507 caaatattaatcatttgacttttggtcctaattagatttttttgctgaggtgg 13480455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 20561011 - 20561065
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgga 59  Q
    |||||||||||||||||||| |||| ||||||||| | | ||||||||||||||||    
T  20561011 tgcaaatattaatcatttgacttttggtcctaatt-atattttttgctgaggtgga 20561065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 39
Target Start/End: Complemental strand, 32337868 - 32337833
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaatta 39  Q
    |||||||||||||||||||| |||||||||||||||    
T  32337868 tgcaaatattaatcatttgacttttcgtcctaatta 32337833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 4 - 150
Target Start/End: Original strand, 38599047 - 38599193
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagatacatggcaactagcgactggctttttgtcagg 103  Q
    |||||||||||||||||||||  |||||||||||||||||  | |||||||||||||||||||||||||  |||||| | | |||||| |||||||||||    
T  38599047 tgcaaatattaatcatttgaaaattcgtcctaattaaaaaaatatgctgaggtggatggtaattagataagtggcaaatggtgactgggtttttgtcagg 38599146  T
Q  104 acacatcagcagatggcaattgcaatgacatttttgcccttaatgaa 150  Q
    |||  | |||||| ||||| ||||||||||||||| |||||||||||    
T  38599147 acatgtaagcagaaggcaaatgcaatgacatttttacccttaatgaa 38599193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 181
Target Start/End: Complemental strand, 33497633 - 33497456
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagatacatggcaactagcgactggctttttgtcagg 103  Q
    ||||| || ||||||||||||  ||||||||||||| |||  |||||||||||||| ||||||||||||| |||||  | | || |||  ||||||||||    
T  33497633 tgcaattactaatcatttgaaaattcgtcctaattacaaaaatttgctgaggtggagggtaattagatacgtggcattttgtgaatggagttttgtcagg 33497534  T
Q  104 acacatcagcagatggcaattgcaatgacatttttgcccttaatgaatcaagactcgcgtgcaaagactattttaccc 181  Q
    |||| |||||||||||| |  | ||||||||||||||||||||||| ||  |||||||| |||| ||| |||||||||    
T  33497533 acacgtcagcagatggcgagggaaatgacatttttgcccttaatgagtctggactcgcgcgcaatgaccattttaccc 33497456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 146
Target Start/End: Original strand, 33497099 - 33497241
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagatacatggcaactagcgactggctttttgtcagg 103  Q
    ||||| || ||||||||||||  ||||||||||||| |||  |||||||||||||| ||||||||||||| || ||  | | || |||  ||||||||||    
T  33497099 tgcaattactaatcatttgaaaattcgtcctaattacaaaaatttgctgaggtggagggtaattagatacgtgacatttggtgaatggagttttgtcagg 33497198  T
Q  104 acacatcagcagatggcaattgcaatgacatttttgcccttaa 146  Q
    |||| |||||||||||| |  | ||||||||||||||||||||    
T  33497199 acacgtcagcagatggcgagggaaatgacatttttgcccttaa 33497241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 181
Target Start/End: Original strand, 24377718 - 24377852
Alignment:
Q  47 ttgctgaggtggatggtaattagatacatggcaactagcgactggctttttgtcaggacacatcagcagatggcaattgcaatgacatttttgcccttaa 146  Q
    |||||||||||||||  |||||||||| |||||||    |||||| | || |||||||||| | |||||| | |  |||||||||||||||||||||||     
T  24377718 ttgctgaggtggatgaaaattagatacgtggcaaccgttgactgggtcttcgtcaggacacctaagcagaagcctcttgcaatgacatttttgcccttac 24377817  T
Q  147 tgaatcaagactcgcgtgcaaagactattttaccc 181  Q
    |||| || |||||||  | |||||| |||||||||    
T  24377818 tgaagcaggactcgcacgtaaagaccattttaccc 24377852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 181
Target Start/End: Complemental strand, 24378990 - 24378837
Alignment:
Q  27 ttcgtcctaattaaaaatttttgctgaggtggatggtaattagatacatggcaactagcgactggctttttgtcaggacacatcagcagatggcaattgc 126  Q
    |||||||||||||||||  || | |||||||||||  |||||||||| ||||||||   |||||| | || || ||||||| | |||| | | |  ||||    
T  24378990 ttcgtcctaattaaaaaaatt-gttgaggtggatgaaaattagatacgtggcaactgttgactgggtcttcgttaggacacgtaagcataagcctcttgc 24378892  T
Q  127 aatgacatttttgcccttaatgaatcaagactcgcgtgcaaagactattttaccc 181  Q
    ||||||||||||||||||| |||| || |||||| | | |||||| |||||||||    
T  24378891 aatgacatttttgcccttactgaagcaggactcgtgcgtaaagaccattttaccc 24378837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 7393162 - 7393107
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgga 59  Q
    ||||||||||||||||||||| ||| |||||||| | || | ||||||||||||||    
T  7393162 tgcaaatattaatcatttgaaatttagtcctaatcacaattgtttgctgaggtgga 7393107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 11478446 - 11478391
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgga 59  Q
    |||||||||||||||||||| |||| ||||||||||    ||||||||||||||||    
T  11478446 tgcaaatattaatcatttgatttttggtcctaattaggtttttttgctgaggtgga 11478391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 29190243 - 29190297
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 58  Q
    |||||||||||||||||||| |||| |||||||||| |  ||||| |||||||||    
T  29190243 tgcaaatattaatcatttgacttttggtcctaattagatttttttcctgaggtgg 29190297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 37342865 - 37342919
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 58  Q
    |||||||||||||||||||| |||| ||||||||||    |||||||||||||||    
T  37342865 tgcaaatattaatcatttgacttttggtcctaattaggtttttttgctgaggtgg 37342919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 43867012 - 43866958
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 58  Q
    |||||||||||||||||||| |||| ||||||||||    |||||||||||||||    
T  43867012 tgcaaatattaatcatttgacttttggtcctaattaggtttttttgctgaggtgg 43866958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 181
Target Start/End: Original strand, 13217 - 13394
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagatacatggcaactagcgactggctttttgtcagg 103  Q
    ||||| || ||||||||||||  |||||||||||||||||   ||||||||||||| ||||||||||||| ||||| || |||| ||| ||||| |||||    
T  13217 tgcaattactaatcatttgaaaattcgtcctaattaaaaaaaattgctgaggtggagggtaattagatacgtggcatctggcgaatggttttttttcagg 13316  T
Q  104 acacatcagcagatggcaattgcaatgacatttttgcccttaatgaatcaagactcgcgtgcaaagactattttaccc 181  Q
    |||| |||||||| ||  |  ||||||||||||||||||||||||||||  |||||  | |||| ||| |||||||||    
T  13317 acacgtcagcagaaggggagggcaatgacatttttgcccttaatgaatctggactcatgcgcaatgaccattttaccc 13394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 116
Target Start/End: Complemental strand, 14394 - 14283
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagatacatggcaactagcgactggctttttgtcagg 103  Q
    ||||| || ||||||||||||  ||| |||||||||||||    |||||||||||| ||||||||||||  ||||| ||  ||| ||| |||||||||||    
T  14394 tgcaattactaatcatttgaaaattcatcctaattaaaaa-aaatgctgaggtggagggtaattagatatgtggcatctgacgaatggttttttgtcagg 14296  T
Q  104 acacatcagcaga 116  Q
    |||| ||||||||    
T  14295 acacgtcagcaga 14283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 181
Target Start/End: Original strand, 20101853 - 20102029
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagatacatggcaactagcgactggctttttgtcagg 103  Q
    ||||| || ||||||||||||  |||||||||||||||||  || ||||||||||||| ||||||||||| ||||| || |||| ||| |||||||||||    
T  20101853 tgcaattaataatcatttgaaaattcgtcctaattaaaaaaatt-gctgaggtggatgctaattagatacgtggcatctggcgaatggttttttgtcagg 20101951  T
Q  104 acacatcagcagatggcaattgcaatgacatttttgcccttaatgaatcaagactcgcgtgcaaagactattttaccc 181  Q
    |||| |||||||||||||   | ||||||||||||||||||||| ||||  |||| |||  ||| ||| |||||||||    
T  20101952 acacgtcagcagatggcatgggaaatgacatttttgcccttaataaatctggacttgcgcacaatgaccattttaccc 20102029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 137
Target Start/End: Complemental strand, 23206425 - 23206292
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagatacatggcaactagcgactggctttttgtcagg 103  Q
    |||||||||||| |||| |||  |||||||||||||||||  |||||| | ||||||||||||||||||  |||| ||| | |||||| |||||||||||    
T  23206425 tgcaaatattaagcattcgaaaattcgtcctaattaaaaaaatttgcttacgtggatggtaattagatatgtggcgactggtgactgggtttttgtcagg 23206326  T
Q  104 acacatcagcagatggcaattgcaatgacatttt 137  Q
    |||| | |||||| ||||||||||||||||||||    
T  23206325 acacgtaagcagaaggcaattgcaatgacatttt 23206292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 137
Target Start/End: Complemental strand, 23678029 - 23677896
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagatacatggcaactagcgactggctttttgtcagg 103  Q
    |||||||||||| |||| |||  |||||||||||||||||  |||||| | ||||||||||||||||||  |||| ||| | |||||| |||||||||||    
T  23678029 tgcaaatattaagcattcgaaaattcgtcctaattaaaaaaatttgcttacgtggatggtaattagatatgtggcgactggtgactgggtttttgtcagg 23677930  T
Q  104 acacatcagcagatggcaattgcaatgacatttt 137  Q
    |||| | |||||| ||||||||||||||||||||    
T  23677929 acacgtaagcagaaggcaattgcaatgacatttt 23677896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 4 - 161
Target Start/End: Original strand, 23183682 - 23183838
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagatacatggcaactagcgactggctttttgtcagg 103  Q
    |||||||||||| ||||| ||  |||||||||||||||  |||||||||||||||||||||| ||| ||| ||||  || | || ||| ||||| |||||    
T  23183682 tgcaaatattaagcatttaaaaattcgtcctaattaaat-tttttgctgaggtggatggtaagtagttacgtggcggctggtgattgggtttttttcagg 23183780  T
Q  104 acacatcagcagatggcaattgcaatgacatttttgcccttaatgaatcaagactcgc 161  Q
    |||| | |||| | || ||||||||||| ||||||||||||||||||||| |||||||    
T  23183781 acacgtaagcaaaaggaaattgcaatgatatttttgcccttaatgaatcaggactcgc 23183838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 4 - 161
Target Start/End: Original strand, 23594939 - 23595095
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagatacatggcaactagcgactggctttttgtcagg 103  Q
    |||||||||||| ||||| ||  |||||||||||||||  |||||||||||||||||||||| ||| ||| ||||  || | || ||| ||||| |||||    
T  23594939 tgcaaatattaagcatttaaaaattcgtcctaattaaat-tttttgctgaggtggatggtaagtagttacgtggcggctggtgattgggtttttttcagg 23595037  T
Q  104 acacatcagcagatggcaattgcaatgacatttttgcccttaatgaatcaagactcgc 161  Q
    |||| | |||| | || ||||||||||| ||||||||||||||||||||| |||||||    
T  23595038 acacgtaagcaaaaggaaattgcaatgatatttttgcccttaatgaatcaggactcgc 23595095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 181
Target Start/End: Complemental strand, 20103162 - 20102985
Alignment:
Q  3 atgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagatacatggcaactagcgactggctttttgtcag 102  Q
    |||||| || ||||||||||||  |||||||||||||||||  || ||||||||||||   |||||||||| ||||||||   |||||| | || |||||    
T  20103162 atgcaattactaatcatttgaaaattcgtcctaattaaaaaaatt-gctgaggtggataaaaattagatacgtggcaactgttgactgggtcttcgtcag 20103064  T
Q  103 gacacatcagcagatggcaattgcaatgacatttttgcccttaatgaatcaagactcgcgtgcaaagactattttaccc 181  Q
    ||||| | |||||| | |  |||||||||||||||||| |||| |||| || |||||||  | |||||| |||||||||    
T  20103063 gacacgtaagcagaagcctcttgcaatgacatttttgcacttactgaagcaggactcgcacgtaaagaccattttaccc 20102985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 16367046 - 16367100
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 58  Q
    |||||||||||||||||||| |||| |||||||||| |  |||||||||||||||    
T  16367046 tgcaaatattaatcatttgacttttggtcctaattagatttttttgctgaggtgg 16367100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 1150238 - 1150183
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgga 59  Q
    |||||||||||||||||||| |||| |||||||||| |  |||||| |||||||||    
T  1150238 tgcaaatattaatcatttgacttttggtcctaattagatttttttgttgaggtgga 1150183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 32519456 - 32519402
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 58  Q
    |||||||||||||||||||| |||| ||||||||||    |||||||||||||||    
T  32519456 tgcaaatattaatcatttgacttttggtcctaattaggtttttttgctgaggtgg 32519402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 19620810 - 19620777
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaat 37  Q
    |||||||||||||||||||||||||| |||||||    
T  19620810 tgcaaatattaatcatttgaattttcatcctaat 19620777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 19607000 - 19607036
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaa 40  Q
    |||||||||||||||||||| |||| |||||||||||    
T  19607000 tgcaaatattaatcatttgacttttggtcctaattaa 19607036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 149
Target Start/End: Complemental strand, 22736698 - 22736562
Alignment:
Q  13 taatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagatacatggcaactagcgactggctttttgtcaggacacatcag 112  Q
    ||||||||||||  ||||||||||||| |||  |||||||||||||| ||||||||| ||| |||||  | | || |||  |||||||||||||||||||    
T  22736698 taatcatttgaaaattcgtcctaattacaaaaatttgctgaggtggagggtaattagctacgtggcatttggtgaatgggattttgtcaggacacatcag 22736599  T
Q  113 cagatggcaattgcaatgacatttttgcccttaatga 149  Q
    |||||||| || | ||| |||||||||||||||||||    
T  22736598 cagatggcgatggaaattacatttttgcccttaatga 22736562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 149
Target Start/End: Original strand, 22735451 - 22735587
Alignment:
Q  13 taatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagatacatggcaactagcgactggctttttgtcaggacacatcag 112  Q
    ||||||||||||  ||||||||||||| |||  |||||||||||||| ||||||||| ||| |||||  | | || |||  |||||||||||||||||||    
T  22735451 taatcatttgaaaattcgtcctaattacaaaaatttgctgaggtggagggtaattagctacgtggcatttggtgaatggggttttgtcaggacacatcag 22735550  T
Q  113 cagatggcaattgcaatgacatttttgcccttaatga 149  Q
     ||||| | || | |||||||||||||||||||||||    
T  22735551 aagatgacgatggaaatgacatttttgcccttaatga 22735587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 149
Target Start/End: Original strand, 44476141 - 44476277
Alignment:
Q  13 taatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagatacatggcaactagcgactggctttttgtcaggacacatcag 112  Q
    ||||||||||||  ||||||||||||| ||| ||||||||||||||| ||| ||||| ||| |||||  ||| ||||||  ||||| |||||||||||||    
T  44476141 taatcatttgaaaattcgtcctaattacaaaattttgctgaggtggagggtgattagctacgtggcacttagtgactggggttttggcaggacacatcag 44476240  T
Q  113 cagatggcaattgcaatgacatttttgcccttaatga 149  Q
    |||||||  |  | ||||||| |||||||||||||||    
T  44476241 cagatggggagggaaatgacaattttgcccttaatga 44476277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 149
Target Start/End: Complemental strand, 44481961 - 44481825
Alignment:
Q  13 taatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagatacatggcaactagcgactggctttttgtcaggacacatcag 112  Q
    ||||||||||||  ||||||||||||| ||| ||||||||||||||| ||| ||||| ||| |||||  ||| ||||||  ||||| |||||||||||||    
T  44481961 taatcatttgaaaattcgtcctaattacaaaattttgctgaggtggagggtgattagctacgtggcacttagtgactggggttttggcaggacacatcag 44481862  T
Q  113 cagatggcaattgcaatgacatttttgcccttaatga 149  Q
    |||||||  |  | ||||||| |||||||||||||||    
T  44481861 cagatggggagggaaatgacaattttgcccttaatga 44481825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 10998174 - 10998120
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 58  Q
    |||||||||||||||||||| |||| ||| ||||||||  |||||||||||||||    
T  10998174 tgcaaatattaatcatttgacttttggtcataattaaatttttttgctgaggtgg 10998120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 11312818 - 11312872
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 58  Q
    |||||||||||||||||||| |||| |||||||||| |  |||||||||||||||    
T  11312818 tgcaaatattaatcatttgacttttggtcctaattagatttttttgctgaggtgg 11312872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 21300215 - 21300271
Alignment:
Q  3 atgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgga 59  Q
    ||||||||||||||||||||| |||| ||||||||||    ||||||||||||||||    
T  21300215 atgcaaatattaatcatttgattttttgtcctaattaggtttttttgctgaggtgga 21300271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 55036970 - 55036918
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggt 56  Q
    |||||||||||||||||||| |||| |||||||||| |  |||||||||||||    
T  55036970 tgcaaatattaatcatttgatttttggtcctaattagatttttttgctgaggt 55036918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 39
Target Start/End: Original strand, 22129089 - 22129124
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaatta 39  Q
    |||||||||||||||||||| |||||||||||||||    
T  22129089 tgcaaatattaatcatttgacttttcgtcctaatta 22129124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 39
Target Start/End: Complemental strand, 24576596 - 24576561
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaatta 39  Q
    ||||||||||||||||||||||||| ||||||||||    
T  24576596 tgcaaatattaatcatttgaattttggtcctaatta 24576561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 1741470 - 1741524
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 58  Q
    |||||||||||||||||||| |||| ||||||||||    |||||||||||||||    
T  1741470 tgcaaatattaatcatttgacttttggtcctaattaggtttttttgctgaggtgg 1741524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 149
Target Start/End: Original strand, 37284192 - 37284337
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagatacatggcaactagcgactggctttttgtcagg 103  Q
    ||||| || ||||||||| ||  ||||||||||||| |||  |||| ||||||||| ||||||||||||| |||||  | | || |||  ||||||||||    
T  37284192 tgcaattactaatcattttaaaattcgtcctaattacaaaaatttgttgaggtggagggtaattagatacgtggcatttggtgaatggagttttgtcagg 37284291  T
Q  104 acacatcagcagatggcaattgcaatgacatttttgcccttaatga 149  Q
    |||| |||||||||||| |  | |||||||||||||||||||||||    
T  37284292 acacgtcagcagatggcgagggaaatgacatttttgcccttaatga 37284337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 181
Target Start/End: Complemental strand, 37289327 - 37289150
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagatacatggcaactagcgactggctttttgtcagg 103  Q
    ||||| || ||||||||| ||  ||||||||||||| |||  |||| ||||||||| ||||||||||||| |||||  | | || |||  ||||||||||    
T  37289327 tgcaattactaatcattttaaaattcgtcctaattacaaaaatttgttgaggtggagggtaattagatacgtggcatttggtgaatggagttttgtcagg 37289228  T
Q  104 acacatcagcagatggcaattgcaatgacatttttgcccttaatgaatcaagactcgcgtgcaaagactattttaccc 181  Q
    |||| ||||| |||||| |  | |||||||||||| |||||||||| ||  || ||||| |||| ||| |||||||||    
T  37289227 acacgtcagctgatggcgagggaaatgacatttttacccttaatgagtctggaatcgcgcgcaatgaccattttaccc 37289150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 37563437 - 37563491
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 58  Q
    |||||||||||||||||||| |||| |||||||||| |  |||||||||||||||    
T  37563437 tgcaaatattaatcatttgacttttggtcctaattagatttttttgctgaggtgg 37563491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 7159230 - 7159197
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaat 37  Q
    ||||||||||||||||||||||||||||||||||    
T  7159230 tgcaaatattaatcatttgaattttcgtcctaat 7159197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 43937977 - 43938031
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 58  Q
    |||||||||||||||||||| |||| ||| |||||| |  |||||||||||||||    
T  43937977 tgcaaatattaatcatttgacttttggtcataattagatttttttgctgaggtgg 43938031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 12931040 - 12931004
Alignment:
Q  3 atgcaaatattaatcatttgaattttcgtcctaatta 39  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  12931040 atgcaaatattaatcatttgacttttggtcctaatta 12931004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 149
Target Start/End: Original strand, 21972181 - 21972317
Alignment:
Q  13 taatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagatacatggcaactagcgactggctttttgtcaggacacatcag 112  Q
    ||||||||||||  ||||||||||||| ||| ||||||||||||||| ||| ||||| ||| |||||  | | ||||||  ||||| |||||||||||||    
T  21972181 taatcatttgaaaattcgtcctaattacaaaattttgctgaggtggagggtgattagctacgtggcacttggtgactggggttttggcaggacacatcag 21972280  T
Q  113 cagatggcaattgcaatgacatttttgcccttaatga 149  Q
    |||||||  |  | ||||||| |||||||||||||||    
T  21972281 cagatggggagggaaatgacaattttgcccttaatga 21972317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 149
Target Start/End: Complemental strand, 21978025 - 21977889
Alignment:
Q  13 taatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagatacatggcaactagcgactggctttttgtcaggacacatcag 112  Q
    ||||||||||||  ||||||||||||| ||| ||||||||||||||| ||| ||||| ||| |||||  | | ||||||  ||||| |||||||||||||    
T  21978025 taatcatttgaaaattcgtcctaattacaaaattttgctgaggtggagggtgattagctacgtggcacttggtgactggggttttggcaggacacatcag 21977926  T
Q  113 cagatggcaattgcaatgacatttttgcccttaatga 149  Q
    |||||||  |  | ||||||| |||||||||||||||    
T  21977925 cagatggggagggaaatgacaattttgcccttaatga 21977889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 14744747 - 14744692
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgga 59  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||| |||||||    
T  14744747 tgcaaatattaatcatttgaattttcgtcctaattaaaaaaatttgcttaggtgga 14744692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 162
Target Start/End: Original strand, 8654190 - 8654349
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttt-tgctgaggtggatggtaattagatacatggcaactagcgactggctttttgtcag 102  Q
    ||||| || ||||||||||||  |||||||||||||||||     || ||||||||| ||||||||||||| ||||| ||  ||| ||| |||||| |||    
T  8654190 tgcaattactaatcatttgaaaattcgtcctaattaaaaaaaaaatgttgaggtggagggtaattagatacgtggcatctgacgaatggttttttgccag 8654289  T
Q  103 gacacatcagcagatggcaattgcaatgacatttttgcccttaatgaatcaagactcgcg 162  Q
     |||| |||||||| ||  |  |||||| ||||||| |||||| | ||||| ||||||||    
T  8654290 aacacgtcagcagaaggggagggcaatggcatttttacccttactaaatcaggactcgcg 8654349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 13064710 - 13064656
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 58  Q
    |||||||||||||||||||| |||| |||||||||| |  |||||||||||||||    
T  13064710 tgcaaatattaatcatttgacttttggtcctaattagatttttttgctgaggtgg 13064656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 20705014 - 20704960
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 58  Q
    |||||||||||||||||||| |||| |||||||||| |  |||||||||||||||    
T  20705014 tgcaaatattaatcatttgacttttggtcctaattagatttttttgctgaggtgg 20704960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 8323357 - 8323303
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 58  Q
    |||||||||||||||||||| |||| ||||||||||    |||||||||||||||    
T  8323357 tgcaaatattaatcatttgacttttggtcctaattaggtttttttgctgaggtgg 8323303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 12991089 - 12991035
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 58  Q
    |||||||||||||||||||| ||||  ||||||||| |  |||||||||||||||    
T  12991089 tgcaaatattaatcatttgacttttgatcctaattagatttttttgctgaggtgg 12991035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 25253387 - 25253333
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 58  Q
    |||||||| ||||||||||| |||| |||||||||| |  |||||||||||||||    
T  25253387 tgcaaatactaatcatttgacttttggtcctaattagatttttttgctgaggtgg 25253333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 25317178 - 25317124
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 58  Q
    |||||||| ||||||||||| |||| |||||||||| |  |||||||||||||||    
T  25317178 tgcaaatactaatcatttgacttttggtcctaattagatttttttgctgaggtgg 25317124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 149
Target Start/End: Original strand, 32619476 - 32619612
Alignment:
Q  13 taatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagatacatggcaactagcgactggctttttgtcaggacacatcag 112  Q
    ||||||||||||  ||||||||||||| ||| ||||||||||||||| ||| ||||| ||| |||||  | | ||||||  ||||| |||||||||||||    
T  32619476 taatcatttgaaaattcgtcctaattacaaaattttgctgaggtggagggtgattagctacgtggcacttggtgactggggttttggcaggacacatcag 32619575  T
Q  113 cagatggcaattgcaatgacatttttgcccttaatga 149  Q
    |||||||  |  | ||||||| |||||||||||||||    
T  32619576 cagatggggagggaaatgacaattttgcccttaatga 32619612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 149
Target Start/End: Complemental strand, 32622364 - 32622228
Alignment:
Q  13 taatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagatacatggcaactagcgactggctttttgtcaggacacatcag 112  Q
    |||| |||||||  |||||| |||||| ||| ||||||||||||||| ||| ||||| ||| |||||  | | ||||||  ||||| |||||||||||||    
T  32622364 taataatttgaaaattcgtcataattacaaaattttgctgaggtggagggtgattagctacgtggcacttggtgactggggttttggcaggacacatcag 32622265  T
Q  113 cagatggcaattgcaatgacatttttgcccttaatga 149  Q
    |||||||  |  | ||||||| |||||||||||||||    
T  32622264 cagatggggagggaaatgacaattttgcccttaatga 32622228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 2828276 - 2828334
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatgg 62  Q
    ||||||||||||||||||||||||||||| ||||||||||  |||||| ||||||||||    
T  2828276 tgcaaatattaatcatttgaattttcgtcttaattaaaaaaatttgcttaggtggatgg 2828334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 152
Target Start/End: Complemental strand, 51935216 - 51935068
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagatacatggcaactagcgactggctttttgtcagg 103  Q
    ||||| || ||||||||||||  |||||||||||||||||    |||||||||||| |||||||||||||||||||  |   || ||| ||||| |||||    
T  51935216 tgcaattactaatcatttgaaaattcgtcctaattaaaaaaaaatgctgaggtggagggtaattagatacatggcatatgatgaatggttttttatcagg 51935117  T
Q  104 acacatcagcagatggcaattgcaatgacatttttgcccttaatgaatc 152  Q
    |||| ||||| || ||  |   ||| |||||||||||| ||||||||||    
T  51935116 acacgtcagccgaaggggaggacaacgacatttttgccattaatgaatc 51935068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 5183589 - 5183643
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 58  Q
    |||||||||||||||||||| |||| |||||||||| |  |||||||||||||||    
T  5183589 tgcaaatattaatcatttgacttttggtcctaattagatttttttgctgaggtgg 5183643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 29043056 - 29043002
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 58  Q
    |||||||||||||||||||| ||||  |||||||||||  |||||||||||||||    
T  29043056 tgcaaatattaatcatttgacttttgatcctaattaaatttttttgctgaggtgg 29043002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 32238828 - 32238888
Alignment:
Q  48 tgctgaggtggatggtaattagatacatggcaactagcgactggctttttgtcaggacaca 108  Q
    |||||||||||||||||||||||||| |||||||  | |||||  |||| |||||||||||    
T  32238828 tgctgaggtggatggtaattagatacgtggcaaccggtgactgagttttggtcaggacaca 32238888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 1047505 - 1047451
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 58  Q
    |||||||||||||||||||| |||| |||||||||| |  |||| ||||||||||    
T  1047505 tgcaaatattaatcatttgacttttggtcctaattagattttttagctgaggtgg 1047451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 2953547 - 2953601
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 58  Q
    |||||||||||||||||||| |||| ||| |||||| |  |||||||||||||||    
T  2953547 tgcaaatattaatcatttgacttttggtcataattagatttttttgctgaggtgg 2953601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 26953184 - 26953234
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgag 54  Q
    |||||||||||||||||||| |||| |||||||||| |  |||||||||||    
T  26953184 tgcaaatattaatcatttgacttttggtcctaattagatttttttgctgag 26953234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 2829556 - 2829523
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaat 37  Q
    ||||||||||||||||||||||||||||| ||||    
T  2829556 tgcaaatattaatcatttgaattttcgtcataat 2829523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 25414927 - 25414980
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtg 57  Q
    |||||||||||||||||||| |||| ||||||||||    ||||||||||||||    
T  25414927 tgcaaatattaatcatttgacttttggtcctaattaggtttttttgctgaggtg 25414980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 149
Target Start/End: Original strand, 73201 - 73337
Alignment:
Q  13 taatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagatacatggcaactagcgactggctttttgtcaggacacatcag 112  Q
    ||||||||||||  || |||||||||| |||  |||||||||||||| ||||||||| ||| |||||  | | || |||  |||||||||||||||||||    
T  73201 taatcatttgaaaatttgtcctaattacaaaaatttgctgaggtggagggtaattagctacgtggcacttggtgaatgggattttgtcaggacacatcag 73300  T
Q  113 cagatggcaattgcaatgacatttttgcccttaatga 149  Q
    |||||||| |  | ||||||  |||||||||||||||    
T  73301 cagatggcgagggaaatgaccattttgcccttaatga 73337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 149
Target Start/End: Complemental strand, 55013097 - 55012961
Alignment:
Q  13 taatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatggtaattagatacatggcaactagcgactggctttttgtcaggacacatcag 112  Q
    ||||||||||||  ||||||||||||| |||  ||||| |||||||| ||||||||| ||| |||||  |   || |||  |||||||| ||||||||||    
T  55013097 taatcatttgaaaattcgtcctaattacaaaaatttgccgaggtggagggtaattaggtacgtggcatttgatgaatggagttttgtcaagacacatcag 55012998  T
Q  113 cagatggcaattgcaatgacatttttgcccttaatga 149  Q
    ||||||||||  | ||||||||||||| |||||||||    
T  55012997 cagatggcaagggaaatgacatttttgtccttaatga 55012961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 54590228 - 54590284
Alignment:
Q  6 caaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatgg 62  Q
    ||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||    
T  54590228 caaatattaatcatttgaattttcgtcctaattaaaaaaatttgcttaggtggatgg 54590284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 47862453 - 47862399
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 58  Q
    |||||||||||||||||||| |||| |||||||||| |  |||||||||||||||    
T  47862453 tgcaaatattaatcatttgacttttggtcctaattagatttttttgctgaggtgg 47862399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 47981937 - 47981882
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgga 59  Q
    |||||||||||||||||||| |||| ||||||||||    ||||||||||||||||    
T  47981937 tgcaaatattaatcatttgatttttggtcctaattaggtttttttgctgaggtgga 47981882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 13872152 - 13872206
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 58  Q
    |||||||| ||||||||||| |||| |||||||||| |  |||||||||||||||    
T  13872152 tgcaaatactaatcatttgacttttggtcctaattagatttttttgctgaggtgg 13872206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 33294444 - 33294390
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgg 58  Q
    |||||||||||||||||||| |||| |||||||||| |  ||||| |||||||||    
T  33294444 tgcaaatattaatcatttgatttttggtcctaattagatttttttactgaggtgg 33294390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 37
Target Start/End: Complemental strand, 54591590 - 54591560
Alignment:
Q  7 aaatattaatcatttgaattttcgtcctaat 37  Q
    |||||||||||||||||||||||||||||||    
T  54591590 aaatattaatcatttgaattttcgtcctaat 54591560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 26601378 - 26601342
Alignment:
Q  3 atgcaaatattaatcatttgaattttcgtcctaatta 39  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  26601378 atgcaaatattaatcatttgacttttggtcctaatta 26601342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 34238772 - 34238736
Alignment:
Q  3 atgcaaatattaatcatttgaattttcgtcctaatta 39  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  34238772 atgcaaatattaatcatttgacttttagtcctaatta 34238736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 261084 - 261142
Alignment:
Q  4 tgcaaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtggatgg 62  Q
    ||||||||||||||||||||||||||| ||||||||||||  |||||| ||||||||||    
T  261084 tgcaaatattaatcatttgaattttcgacctaattaaaaaaatttgcttaggtggatgg 261142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 10961 - 10908
Alignment:
Q  6 caaatattaatcatttgaattttcgtcctaattaaaaatttttgctgaggtgga 59  Q
    |||||||||||||||||| |||| ||||||||||    ||||||||||||||||    
T  10961 caaatattaatcatttgacttttggtcctaattaggtttttttgctgaggtgga 10908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University