View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10702_high_21 (Length: 244)
Name: NF10702_high_21
Description: NF10702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10702_high_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 31 - 197
Target Start/End: Complemental strand, 29058114 - 29057948
Alignment:
| Q |
31 |
aaatattgttcaggcaagagttaacggcctatggttttttagtactcctccggtaaagcagtgaactatgataattgagatatgaaataattgaaataaa |
130 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29058114 |
aaatattgttcaggaaagagataacggcctatggttttttaatattcctccgataaagcagtgaactatgataattgagatatgaaataattgaaataaa |
29058015 |
T |
|
| Q |
131 |
ggaaagcttaaaataaaatggcagaaatatataggattggtggatgaagattatcatcatcaataga |
197 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
29058014 |
gaaaagcttaaaataaaatggcagaaatatataggtttggtggatgaagattatcatcatcaataga |
29057948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 35431678 - 35431604
Alignment:
| Q |
85 |
aaagcagtgaactatgataattgagatatgaaataattgaaataaaggaaagcttaaaataaaatggcagaaatata |
161 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||||| || |||||||| | ||||||||||||||||| |
|
|
| T |
35431678 |
aaagcagtgaactatgataattgagatttgaaataatttaaatatagaaaagcttata--aaaatggcagaaatata |
35431604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 11354172 - 11354222
Alignment:
| Q |
145 |
aaaatggcagaaatatataggattggtggatgaagattatcatcatcaataga |
197 |
Q |
| |
|
||||||||||||||||| || || |||||||||||||||||||||||||||| |
|
|
| T |
11354172 |
aaaatggcagaaatata--ggtttagtggatgaagattatcatcatcaataga |
11354222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 120
Target Start/End: Original strand, 34607568 - 34607603
Alignment:
| Q |
85 |
aaagcagtgaactatgataattgagatatgaaataa |
120 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |
|
|
| T |
34607568 |
aaagcagtgaactatgataatcgagatatgaaataa |
34607603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University