View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10702_high_29 (Length: 226)
Name: NF10702_high_29
Description: NF10702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10702_high_29 |
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Alignment Details
Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 78 - 210
Target Start/End: Original strand, 29205582 - 29205714
Alignment:
| Q |
78 |
ctgttgacggtaaacaaattcgttcaaatgcgaaatcaatgtttattacaaactattaggggcaatcccaatccaagttgcagagtcgattctaacgatt |
177 |
Q |
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| T |
29205582 |
ctgttgacggtaaacaaattcgttcaaatgcgaaatcaatgtttattacaaactattaggggcaatcccaatccaagttgcagagtcgattctaacgatt |
29205681 |
T |
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| Q |
178 |
aatgttagtattttcacgtgtgagtaagaatct |
210 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
29205682 |
aatgttagtattttcacgtgtgagtaagaatct |
29205714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 9e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 78 - 210
Target Start/End: Complemental strand, 12646293 - 12646161
Alignment:
| Q |
78 |
ctgttgacggtaaacaaattcgttcaaatgcgaaatcaatgtttattacaaactattaggggcaatcccaatccaagttgcagagtcgattctaacgatt |
177 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
12646293 |
ctgttgacggtaaacaaattcgttcaaatacaaaatcaatgtttattacaaactattagggacaatcccaatccaagttgcagagtcgattctaacgatt |
12646194 |
T |
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| Q |
178 |
aatgttagtattttcacgtgtgagtaagaatct |
210 |
Q |
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|||||||||||||||| |||||||||||||||| |
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| T |
12646193 |
aatgttagtattttcaagtgtgagtaagaatct |
12646161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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