View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10702_high_3 (Length: 453)
Name: NF10702_high_3
Description: NF10702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10702_high_3 |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 19 - 442
Target Start/End: Complemental strand, 31045472 - 31045049
Alignment:
| Q |
19 |
cagtaatcctaataaactgtagaagtgtgttccaatccatatattttagagtgtggagagaacaaatgaagttgtagaagtgtgcggagaggatagatga |
118 |
Q |
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| T |
31045472 |
cagtaatcctgataaactgtagaagcgtgttccaatccataaattttatagtgtggagagaacaaatgaagttgtagaagtgtgcggagaggatagatga |
31045373 |
T |
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| Q |
119 |
agttgtagaagtctagagttaaattaaatgtatgttgtgacaattggatacggataaaatatgtactcataattcaatggaattttagagaaagagaggg |
218 |
Q |
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| T |
31045372 |
agttgtagaagtctagagttaaattaaatgtatgttgtgacaattggatacggataaaatatgtactcataattcaatggaattttagagaaagagaggg |
31045273 |
T |
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| Q |
219 |
ctatatgaacatgtttgcatgagtttaaattttgaatcttaatttacatatacaaaaagtttttaatgtgaagatgaagacttgttatatgccgcaaact |
318 |
Q |
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| T |
31045272 |
ttatatgaacatgtttgcatgagtttaaattttgaatcttaatttacatatacaaaaagtttttaatgtgaagatgaagacttgttatatgccgcaagct |
31045173 |
T |
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| Q |
319 |
tcgtttggtgaggctttaggagaagagcaacttttcctttacatacactgctgcataccttgcatgtgatgattcatgtcacactgtttatggtctttat |
418 |
Q |
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| T |
31045172 |
tcgtttggtgaggctttaggagaatagcaacttttcctttacatacactgctgaataccttgcatgagatgattcatgtcagactgtttatggtctttat |
31045073 |
T |
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| Q |
419 |
ctgagctctttgcttatagttcat |
442 |
Q |
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| T |
31045072 |
ctgagctctttgcttatagttcat |
31045049 |
T |
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Target: scaffold0018 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 124 - 442
Target Start/End: Original strand, 172005 - 172338
Alignment:
| Q |
124 |
tagaagtctagagttaaattaaatgtatgt-tgtgacaattggatacggataaaatatgtactcataattcaatggaattttagagaaagagagggctat |
222 |
Q |
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||||||| ||||||| ||||||||| |||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||| ||| |
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| T |
172005 |
tagaagtgtagagtttaattaaatgaatgtgtgtgacaattggatacggatgaaatatgtactaataattcaatggaatttcagagaaagagaggattat |
172104 |
T |
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| Q |
223 |
atgaacatgtttgcatgagtttaaattttgaatcttaatttacatatacaaaaagtttttaatgtgaagatgaagacttgttatatgcc------gcaaa |
316 |
Q |
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| T |
172105 |
atgaacatgtttgcatgagattgaattttgaa-cttaatttacatatacaaaatgtttttaatgtgaagatgaagacctgttatatatcttctaatcaag |
172203 |
T |
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| Q |
317 |
cttcgtttggtgaggctttaggagaagagcaac-ttttcctt-tacatacactgc---tgcatacc--ttgcatgtgatgattcatgtcacac--tgttt |
407 |
Q |
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| T |
172204 |
cttcgtttggtgtggctttaagagaagagcaacattttccttctagaaacgtttcctttacacacccgtttcatgtgatgattcatgtcacactttgttt |
172303 |
T |
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| Q |
408 |
atggtctttatctgagctctttgcttatagttcat |
442 |
Q |
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| T |
172304 |
atggtctttatctgagctatttgcttataattcat |
172338 |
T |
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