View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10702_high_4 (Length: 428)
Name: NF10702_high_4
Description: NF10702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10702_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 32830741 - 32830387
Alignment:
| Q |
1 |
tgttctattttcagcattggtattagacaaatttggaagaaggcccatgctgttgttgggctcatcaggtatggcagtgtccttatttgggcttggaatg |
100 |
Q |
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| T |
32830741 |
tgttctattttcagcattggtattagacagatttggaagaaggcccatgttgttgttgggctcatcaggtatggcagtgtccttatttgggcttggaatg |
32830642 |
T |
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| Q |
101 |
ggatgtactttacttcacaattcagatgaaaagcccatgtgggctattgctttgtgtgtggttgctgtttgtgctgctgtttcannnnnnnctattgggc |
200 |
Q |
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| T |
32830641 |
ggatgtactttacttcacaattcagatgaaaagcccatgtgggctattgctttgtgtgtggttgctgtttgtgctgctgtttcatttttttctattgggc |
32830542 |
T |
|
| Q |
201 |
ttgggcctacaacatgggtctattcatcagaaatttttcctatgaggttaagggcacaagggacaagtttggcaatttctgtgaaccgtttgattagtgg |
300 |
Q |
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| T |
32830541 |
ttgggcctacaacatgggtctattcatcagaaatttttcctatgaggttaagggcacaagggacaagtttggcaatttctgttaaccgtttgattagtgg |
32830442 |
T |
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| Q |
301 |
tgtagtgtctatgtcttttcttagtatctcagaggaaatcacttttggaggcatg |
355 |
Q |
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| T |
32830441 |
tgtagtgtctatgtcttttcttagtatctcagaggaaatcacttttggaggcatg |
32830387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 313
Target Start/End: Original strand, 43547416 - 43547537
Alignment:
| Q |
192 |
ctattgggcttgggcctacaacatgggtctattcatcagaaatttttcctatgaggttaagggcacaagggacaagtttggcaatttctgtgaaccgttt |
291 |
Q |
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| T |
43547416 |
ctattgggcttgggcctattacttgggtttattcttcggagatttttcctatgaggcttagagctcaaggttcgagtattgcaatttcagtgaatcggtt |
43547515 |
T |
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| Q |
292 |
gattagtggtgtagtgtctatg |
313 |
Q |
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| T |
43547516 |
ggtaagtggagtggtgtctatg |
43547537 |
T |
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