View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10702_low_1 (Length: 749)
Name: NF10702_low_1
Description: NF10702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10702_low_1 |
 | |
|
| [»] scaffold0024 (2 HSPs) |
| | |
|
| [»] scaffold0368 (2 HSPs) |
| | |
|
| [»] scaffold0743 (2 HSPs) |
| | |
|
| [»] scaffold0583 (2 HSPs) |
| | |
|
| [»] scaffold0252 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 451 - 734
Target Start/End: Complemental strand, 35768675 - 35768380
Alignment:
| Q |
451 |
ttactatccctactctaagctaaaactcgaaacagaaacaccgaaataaaccaagaacaaattaaaatttctgcaacaataa--------cacctt-gac |
541 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||| ||||||||||| |||||| ||| |
|
|
| T |
35768675 |
ttactatccctactctaagctaaaactccaaacagaaacaccaaaataaaccaaaaacaaattaaaatttttgcaacaataagtcaataacacctttgac |
35768576 |
T |
|
| Q |
542 |
cttgtcataacagtatcaaacaccaatttgagcttcacaatgtgattg-catgccagaatcaaaatatagacatcattcaaatttgtcgtaagcttcttc |
640 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||| ||| ||||||||||||||||||||| |
|
|
| T |
35768575 |
cttgtcataacagtatcaaacaccaatttgagcttcacaatgtaattggcatgccagaatcaaaatatatacattattaaaatttgtcgtaagcttcttc |
35768476 |
T |
|
| Q |
641 |
ctttgtctgaacaaaactgatgaaccactattggcttgcag--atccttcattaggcaacatctccatatcattgagaaaaacaatagaaattaat |
734 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
35768475 |
ctttgtctgaacaaaactgttgaaccactattggcttgcagatatccttcattaggcaagatctccatatcattgagaaaagcaaaagaaattaat |
35768380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 22 - 147
Target Start/End: Complemental strand, 26628479 - 26628353
Alignment:
| Q |
22 |
aacaaaaaagtaacaggacaacagagtttgagattattaaacaaaaaa-taacatgataacagagcaaacacgacaaagtagaggaagatttacatcaga |
120 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| | |||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26628479 |
aacaaaaaagtaacaggacaacagagtttaagaatgttaaacaaaaaaataacaggacaacagagcaaacacgacaaagtagaggaagatttacagcaga |
26628380 |
T |
|
| Q |
121 |
ggtgaagaagtttcacaaaacagcaga |
147 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
26628379 |
ggtgaagaagtttcacaaaacagcaga |
26628353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 22 - 153
Target Start/End: Complemental strand, 23550892 - 23550759
Alignment:
| Q |
22 |
aacaaaaaagtaacaggacaacagagttt-gagattattaaacaaaaaa-taacatgataacagagcaaacacgacaaagtagaggaagatttacatcag |
119 |
Q |
| |
|
|||||||||||||||| |||||||| ||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
23550892 |
aacaaaaaagtaacagaacaacagaattttgagattattaaacaaaaaaataacaggataacagagcaaacacgacaaagtagaggaagatttacagcag |
23550793 |
T |
|
| Q |
120 |
aggtgaagaagtttcacaaaacagcagaaaagca |
153 |
Q |
| |
|
||||||| |||||| ||| ||||||||||||||| |
|
|
| T |
23550792 |
aggtgaataagttttacagaacagcagaaaagca |
23550759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 261 - 402
Target Start/End: Complemental strand, 30220711 - 30220581
Alignment:
| Q |
261 |
caaggacaattttgtattttctcttaaaatgaaatagcggttctaaaccgcaaaacagctacgaagcgttgcgccgctatagcaccgctatctcacaccg |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| | |||||||||||||| |
|
|
| T |
30220711 |
caaggacaattttgtattttctcttaaaatgaaatagcggttctaaaccgtaaaaccgctacgaagcgttgcg-----------cagctatctcacaccg |
30220623 |
T |
|
| Q |
361 |
caacgctatggcttgttgcgtagcgctccggcaccgcaccgc |
402 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30220622 |
caacactatggcttgttgcgtagcgctccggcaccgcaccgc |
30220581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 165 - 402
Target Start/End: Complemental strand, 26628318 - 26628098
Alignment:
| Q |
165 |
cgttttgcgtaagaatgaaagaaggaagtgagaagctgaactttttagggtttgatgaaaatgtcaaaaataccctcnnnnnnnnnnnnnnnnnntcaag |
264 |
Q |
| |
|
|||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
26628318 |
cgttttgcataagaatgaaagaaggaagagcgaagctgaactttttagggtttgatgaaaatgttaaaaatacccttgttttttttaaac------caag |
26628225 |
T |
|
| Q |
265 |
gacaattttgtattttctcttaaaatgaaatagcggttctaaaccgcaaaacagctacgaagcgttgcgccgctatagcaccgctatctcacaccgcaac |
364 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||| ||||||||||||||||| ||||| |
|
|
| T |
26628224 |
gacaatttggtattttctcttaaaatgaaatagcagttctaaaccgcaaaaccgctaccaagcgtt-----------gcaccgctatctcacacagcaac |
26628136 |
T |
|
| Q |
365 |
gctatggcttgttgcgtagcgctccggcaccgcaccgc |
402 |
Q |
| |
|
|||||||||||||| ||||||||||| |||| |||||| |
|
|
| T |
26628135 |
gctatggcttgttgtgtagcgctccgacaccacaccgc |
26628098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 22 - 153
Target Start/End: Complemental strand, 30220884 - 30220752
Alignment:
| Q |
22 |
aacaaaaaagtaacaggacaacagagttt-gagattattaaacaaaaaa-taacatgataacagagcaaacacgacaaagtagaggaagatttacatcag |
119 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
30220884 |
aacaaaaaagtaacaggacatcagagttttgagattgttaaacaaaaaaataacaggataacagagcaaacacgacaaagtagaggaagatttacagcag |
30220785 |
T |
|
| Q |
120 |
aggtgaagaagtttcacaaaacagcagaaaagca |
153 |
Q |
| |
|
||||||| |||||| ||| ||||||||||||||| |
|
|
| T |
30220784 |
aggtgaa-aagttttacagaacagcagaaaagca |
30220752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 261 - 406
Target Start/End: Complemental strand, 23550719 - 23550585
Alignment:
| Q |
261 |
caaggacaattttgtattttctcttaaaatgaaatagcggttctaaaccgcaaaacagctacgaagcgttgcgccgctatagcaccgctatctcacaccg |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| | |||| |||||||| ||||||||||||| |
|
|
| T |
23550719 |
caaggacaattttgtattttctcttaaaatgaaatagcggttctaaactgcaaaaccgctcctaagcattgcgccg-----------ctatctcacaccg |
23550631 |
T |
|
| Q |
361 |
caacgctatggcttgttgcgtagcgctccggcaccgcaccgcgcgg |
406 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
23550630 |
caacactatggcttgttgcgtagcgctccggtaccgcaccgcgcgg |
23550585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 470 - 539
Target Start/End: Complemental strand, 35764487 - 35764420
Alignment:
| Q |
470 |
ctaaaactcgaaacagaaacaccgaaataaaccaagaacaaattaaaatttctgcaacaataacaccttg |
539 |
Q |
| |
|
||||||||| ||||| ||||||| ||||||||||||||| |||||||| ||| || |||||||||||||| |
|
|
| T |
35764487 |
ctaaaactccaaacataaacaccaaaataaaccaagaac-aattaaaacttcggc-acaataacaccttg |
35764420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 154; Significance: 3e-81; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 22 - 393
Target Start/End: Original strand, 40400639 - 40401026
Alignment:
| Q |
22 |
aacaaaaaagtaacaggacaacagagtttgagattattaaacaaaaaa-taacatgataacagagcaaacacgacaaagtagaggaagatttacatcaga |
120 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||| |||||||||||| ||||| ||||||| ||||||||||||||| | ||||||||| |||| || | |
|
|
| T |
40400639 |
aacaaaaaagtaacaggacaacaaattttgagattgttaaacaaaaaaataacaggataacaaagcaaacacgacaaaat-gaggaagatatacagcaaa |
40400737 |
T |
|
| Q |
121 |
ggtgaagaagtttcacaaaacagcagaaaagcaaagagaatatgcgttttgc------------------gtaagaatgaaagaaggaagtgagaagctg |
202 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||| ||| |||||| |||||||| ||||||||||| ||||||||| |
|
|
| T |
40400738 |
ggtgaagaagtttcacagaacagcagaaaagcagagagaaggtgcattttgcagataaacacgattttgcgtaagaataaaagaaggaagagagaagctg |
40400837 |
T |
|
| Q |
203 |
aactttttagggtttgatgaaaatgtcaaaaataccctcnnnnnnnnnnnnnnnnnntcaaggacaattttgtattttctcttaaaatgaaatagcggtt |
302 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
40400838 |
aactttttagggtttgataaaaatgtcaaaaatacccttgtttcttttaaaaaaac--caaggacaattttgtattttctcttaaaatgaaatagcgatt |
40400935 |
T |
|
| Q |
303 |
ctaaaccgcaaaacagctacgaagcgttgcgccgctatagcaccgctatctcacaccgcaacgctatggcttgttgcgtagcgctccggca |
393 |
Q |
| |
|
||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
40400936 |
ctaaatcgcaaaactgctacgaagtgttgcgccgctatagcaccgctatctcacaccgcaacattatgacttgttgcgtagcgctccggca |
40401026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 22 - 153
Target Start/End: Complemental strand, 13706079 - 13705946
Alignment:
| Q |
22 |
aacaaaaaagtaacaggacaacagagttt-gagattattaaacaaaaaa-taacatgataacagagcaaacacgacaaagtagaggaagatttacatcag |
119 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
13706079 |
aacaaaaaagtaacaggacaacaaagttttgagattgttaaacaaaaaaataacaggataacagagcaaacacgacaaagtagaggaagatttacagcag |
13705980 |
T |
|
| Q |
120 |
aggtgaagaagtttcacaaaacagcagaaaagca |
153 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |
|
|
| T |
13705979 |
aggtgaagaagttttacaaaacagcagaaaagca |
13705946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 261 - 399
Target Start/End: Complemental strand, 13705907 - 13705780
Alignment:
| Q |
261 |
caaggacaattttgtattttctcttaaaatgaaatagcggttctaaaccgcaaaacagctacgaagcgttgcgccgctatagcaccgctatctcacaccg |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
13705907 |
caaggacaattttgtattttctcttaaaatgaaatagcggttctaaaccgcaaaaccactacgaagcgttgcgccg-----------ctatctcacaccg |
13705819 |
T |
|
| Q |
361 |
caacgctatggcttgttgcgtagcgctccggcaccgcac |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13705818 |
caacgctatggcttgttgcgtagcgctccggcaccgcac |
13705780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 261 - 409
Target Start/End: Original strand, 3103259 - 3103396
Alignment:
| Q |
261 |
caaggacaattttgtattttctcttaaaatgaaatagcggttctaaaccgcaaaacagctacgaagcgttgcgccgctatagcaccgctatctcacaccg |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||| | |
|
|
| T |
3103259 |
caaggacaattttgtattttctcttaaaatgaaatagcggttctaaactgcaaaaccgctacgaagcgttgcg-----------ccgctatctcacactg |
3103347 |
T |
|
| Q |
361 |
caacgctatggcttgttgcgtagcgctccggcaccgcaccgcgcggccg |
409 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
3103348 |
caacgctatggcttgttgcgtagcgctctggcaccgcaccgtgcggccg |
3103396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 22 - 151
Target Start/End: Original strand, 3103087 - 3103218
Alignment:
| Q |
22 |
aacaaaaaagtaacaggacaacagagttt-gagattattaaacaaaa-aataacatgataacagagcaaacacgacaaagtagaggaagatttacatcag |
119 |
Q |
| |
|
|||||||||||||||||| ||| | |||| |||||| |||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
3103087 |
aacaaaaaagtaacaggaaaacggggttttgagattgttaaacaaaaaaataacaggataacagagaaaacacgacaaagtagaggaagatttacagcag |
3103186 |
T |
|
| Q |
120 |
aggtgaagaagtttcacaaaacagcagaaaag |
151 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||| |
|
|
| T |
3103187 |
aggtgaagaagttttacagaacagcagaaaag |
3103218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 19163460 - 19163516
Alignment:
| Q |
181 |
gaaagaaggaagtgagaagctgaactttttagggtttgatgaaaatgtcaaaaataccc |
239 |
Q |
| |
|
|||||||||||| |||||||||| | ||||||||| |||||||||||||||||||||| |
|
|
| T |
19163460 |
gaaagaaggaag--agaagctgaattatttagggttcgatgaaaatgtcaaaaataccc |
19163516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 141; Significance: 2e-73; HSPs: 14)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 261 - 425
Target Start/End: Original strand, 25467770 - 25467934
Alignment:
| Q |
261 |
caaggacaattttgtattttctcttaaaatgaaatagcggttctaaaccgcaaaacagctacgaagcgttgcgccgctatagcaccgctatctcacaccg |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
25467770 |
caaggacaattttgtattttctcttaaaatgaaatagcggttctaaaccgcaaaaccactacgaagcgttgcgccgctatagcgccgctatctcacactg |
25467869 |
T |
|
| Q |
361 |
caacgctatggcttgttgcgtagcgctccggcaccgcaccgcgcggccggtattgactactatgg |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
25467870 |
caacgctatggcttgttgcgtagcgctccggcaccgcaccgcgtggccgctattgactactatgg |
25467934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 22 - 153
Target Start/End: Complemental strand, 6600579 - 6600446
Alignment:
| Q |
22 |
aacaaaaaagtaacaggacaacagagttt-gagattattaaacaaaaaa-taacatgataacagagcaaacacgacaaagtagaggaagatttacatcag |
119 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
6600579 |
aacaaaaaagtaacaggacaacagagttttgagattgttaaacaaaaaaataacaggataacagagcaaacacgacaaagtagaggaagatttacagcag |
6600480 |
T |
|
| Q |
120 |
aggtgaagaagtttcacaaaacagcagaaaagca |
153 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||| |
|
|
| T |
6600479 |
aggtgaagaagttttacagaacagcagaaaagca |
6600446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 23 - 153
Target Start/End: Complemental strand, 42939269 - 42939137
Alignment:
| Q |
23 |
acaaaaaagtaacaggacaacagagttt-gagattattaaacaaaaaa-taacatgataacagagcaaacacgacaaagtagaggaagatttacatcaga |
120 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
42939269 |
acaaaaaagtaacaggacaacagagttttgagattgttaaacaaaaaaataacaggataacagagcaaacacgacaaagtagaggaatatttacagcaga |
42939170 |
T |
|
| Q |
121 |
ggtgaagaagtttcacaaaacagcagaaaagca |
153 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||| |
|
|
| T |
42939169 |
ggtgaagaagttttacagaacagcagaaaagca |
42939137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 261 - 402
Target Start/End: Complemental strand, 42939097 - 42938967
Alignment:
| Q |
261 |
caaggacaattttgtattttctcttaaaatgaaatagcggttctaaaccgcaaaacagctacgaagcgttgcgccgctatagcaccgctatctcacaccg |
360 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
42939097 |
caaggacacttttgtattttctcttaaaatgaaatagcggttctaaaccgcaaaaccgctacgaagcgttgcgccg-----------ctatctcacaccg |
42939009 |
T |
|
| Q |
361 |
caacgctatggcttgttgcgtagcgctccggcaccgcaccgc |
402 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
42939008 |
caacgctatggcttgttgagtagcgctccggcaccgcaccgc |
42938967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 22 - 153
Target Start/End: Original strand, 22339389 - 22339522
Alignment:
| Q |
22 |
aacaaaaaagtaacaggacaacagagttt-gagattattaaacaaaa-aataacatgataacagagcaaacacgacaaagtagaggaagatttacatcag |
119 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
22339389 |
aacaaaaaagtaacaggacaacaaagttttgagattgttaaacaaaaaaataacaggataacagagcaaacacgacaaagtagaggaagatttacagcag |
22339488 |
T |
|
| Q |
120 |
aggtgaagaagtttcacaaaacagcagaaaagca |
153 |
Q |
| |
|
|||||||||||||| ||| ||||| ||||||||| |
|
|
| T |
22339489 |
aggtgaagaagttttacagaacagaagaaaagca |
22339522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 261 - 423
Target Start/End: Complemental strand, 6600403 - 6600249
Alignment:
| Q |
261 |
caaggacaattttgtattttctcttaaaatgaaatagcggttctaaaccgcaaaacagctacgaagcgttgcgccgctatagcaccgctatctcacaccg |
360 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||| || ||||||||||||| |
|
|
| T |
6600403 |
caaggacaattttgtattttctct-aaaatgaaatagcggttc-aaaccgcaaaaccgctacgaagcgttgcg-----------ccactatctcacaccg |
6600317 |
T |
|
| Q |
361 |
caacgctatggcttgttgcgtagcgctccg-----gcaccgcaccgcgcggccggtattgactactat |
423 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
6600316 |
caacgctatggcttgttgcgaagcgctccggcaccgcaccgcaccgcgcggccgctattgactactat |
6600249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 25 - 153
Target Start/End: Original strand, 25467593 - 25467728
Alignment:
| Q |
25 |
aaaaaagtaacaggacaacagagttt-gagattattaaacaaaaaa-taacatgataacagagcaaacacgacaaag-----tagaggaagatttacatc |
117 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
25467593 |
aaaaaagtaacaggacaacagagttttgagattgttaaacaaaaaaataacaggataacagagcaaacacgacaaagtaaagtagaggaagatttacagc |
25467692 |
T |
|
| Q |
118 |
agaggtgaagaagtttcacaaaacagcagaaaagca |
153 |
Q |
| |
|
| |||| ||||||||| ||| ||||||||||||||| |
|
|
| T |
25467693 |
aaaggttaagaagttttacagaacagcagaaaagca |
25467728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 165 - 240
Target Start/End: Original strand, 16932346 - 16932421
Alignment:
| Q |
165 |
cgttttgcgtaagaatgaaagaaggaagtgagaagctgaactttttagggtttgatgaaaatgtcaaaaataccct |
240 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
16932346 |
cgttttgcgtaagaatgaaagaaggaagagagaagctaaactttttaggatttgatgaaaatgtaaaaaataccct |
16932421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 261 - 316
Target Start/End: Original strand, 22339562 - 22339617
Alignment:
| Q |
261 |
caaggacaattttgtattttctcttaaaatgaaatagcggttctaaaccgcaaaac |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22339562 |
caaggacaattttgtattttctcttaaaatgaaatagcggttctaaaccgcaaaac |
22339617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 361 - 409
Target Start/End: Original strand, 22339620 - 22339668
Alignment:
| Q |
361 |
caacgctatggcttgttgcgtagcgctccggcaccgcaccgcgcggccg |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
22339620 |
caacgctatggcttgttgcgtagcgctccggcaccgcaccgtgcggccg |
22339668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 368 - 421
Target Start/End: Complemental strand, 17588208 - 17588155
Alignment:
| Q |
368 |
atggcttgttgcgtagcgctccggcaccgcaccgcgcggccggtattgactact |
421 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||||| ||||||||||| |
|
|
| T |
17588208 |
atggcttgttgcgtagcgctccagcaccgcaccgcggggccgctattgactact |
17588155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 342 - 402
Target Start/End: Original strand, 16932499 - 16932559
Alignment:
| Q |
342 |
gcaccgctatctcacaccgcaacgctatggcttgttgcgtagcgctccggcaccgcaccgc |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||||||| | |||||| |
|
|
| T |
16932499 |
gcaccgctatctcacaccgcaacgctatggctaattgtgtagcgctccggcaacacaccgc |
16932559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 261 - 311
Target Start/End: Original strand, 16932437 - 16932487
Alignment:
| Q |
261 |
caaggacaattttgtattttctcttaaaatgaaatagcggttctaaaccgc |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||| ||||||| |
|
|
| T |
16932437 |
caaggacaattttgtattttctcttaaaatgtaatagtggttccaaaccgc |
16932487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 16932217 - 16932264
Alignment:
| Q |
22 |
aacaaaaaagtaacaggacaacagagtttgagattattaaacaaaaaa |
69 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||| |||||||||||| |
|
|
| T |
16932217 |
aacaaaaaagtaataggacaacagagtatgagattgttaaacaaaaaa |
16932264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 125; Significance: 5e-64; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 165 - 409
Target Start/End: Complemental strand, 43904451 - 43904221
Alignment:
| Q |
165 |
cgttttgcgtaagaatgaaagaaggaagtgagaagctgaactttttagggtttgatgaaaatgtcaaaaataccctcnnnnnnnnnnnnnnnnnntcaag |
264 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
43904451 |
cgttttgcgtaagaatgaaagaaggaagagagaagctgaactttttagggtttgatgaaaatgtcaaaaataccctctctttttttttaaaac---caag |
43904355 |
T |
|
| Q |
265 |
gacaattttgtattttctcttaaaatgaaatagcggttctaaaccgcaaaacagctacgaagcgttgcgccgctatagcaccgctatctcacaccgcaac |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||| | |||||||||||||||||||| |
|
|
| T |
43904354 |
gacaattttgtattttctcttaaaatgaaatagcggttctaaaccgcaaaaccgctacaaagtgttgtg-----------ccgctatctcacaccgcaac |
43904266 |
T |
|
| Q |
365 |
gctatggcttgttgcgtagcgctccggcaccgcaccgcgcggccg |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43904265 |
gctatggcttgttgcgtagcgctccggcaccgcaccgcgcggccg |
43904221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 261 - 409
Target Start/End: Complemental strand, 42421224 - 42421076
Alignment:
| Q |
261 |
caaggacaattttgtattttctcttaaaatgaaatagcggttctaaaccgcaaaacagctacgaagcgttgcgccgctatagcaccgctatctcacaccg |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||| | |||||||||||||| |
|
|
| T |
42421224 |
caaggacaattttgtattttctcttaaaatgaaattgcggttctaaaccgcaaaaccgctacgaagtgttgcgccgctatagcgctgctatctcacaccg |
42421125 |
T |
|
| Q |
361 |
caacgctatggcttgttgcgtagcgctccggcaccgcaccgcgcggccg |
409 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
42421124 |
caacgttatggcttgttgcgtaccgctccggcaccgcaccgcgcggccg |
42421076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 22 - 171
Target Start/End: Original strand, 32754533 - 32754683
Alignment:
| Q |
22 |
aacaaaaaagtaacaggacaacagagtttgagattattaaacaaaa-aataacatgataacagagcaaacacgacaaagtagaggaagatttacatcaga |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
32754533 |
aacaaaaaagtaacaggacaacagagtttgagattgttaaacaaaaaaataacaggataacagagcaaacacgacaaagtagaggaagatttacagcaga |
32754632 |
T |
|
| Q |
121 |
ggtgaagaagtttcacaaaacagcagaaaagcaaagagaatatgcgttttg |
171 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||| ||| |||||| |
|
|
| T |
32754633 |
ggtgaagaagtttcacagaacagcagaaaagcagagagaagatgtgttttg |
32754683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 165 - 409
Target Start/End: Original strand, 32754702 - 32754929
Alignment:
| Q |
165 |
cgttttgcgtaagaatgaaagaaggaagtgagaagctgaactttttagggtttgatgaaaatgtcaaaaataccctcnnnnnnnnnnnnnnnnnntcaag |
264 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
32754702 |
cgttttgcgtaagaatgaaagaaggaagagagaagctgaactttttagggtttgatgaaa-tgtcaaaaatacccttgtttttttttaaaac----caag |
32754796 |
T |
|
| Q |
265 |
gacaattttgtattttctcttaaaatgaaatagcggttctaaaccgcaaaacagctacgaagcgttgcgccgctatagcaccgctatctcacaccgcaac |
364 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
32754797 |
gacaattttgtattttctcttaaaatgaaatagcggttctaaaccacaaaaccgctacgaag-gttgcgccgc-----------tatctcacaccgcaac |
32754884 |
T |
|
| Q |
365 |
gctatggcttgttgcgtagcgctccggcaccgcaccgcgcggccg |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32754885 |
gctatggcttgttgcgtagcgctccggcaccgcaccgcgcggccg |
32754929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 22 - 153
Target Start/End: Complemental strand, 42421400 - 42421265
Alignment:
| Q |
22 |
aacaaaaaagtaacaggacaacagagttt-gagattattaaacaa---aaaataacatgataacagagcaaacacgacaaagtagaggaagatttacatc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||||| ||||||||| ||||||| ||||||||| ||||||||||| |||||||||| | |
|
|
| T |
42421400 |
aacaaaaaagtaacaggacaacagagttttgagattgttaaacaacaaaaaataacaggataacaaagcaaacacaacaaagtagagaaagatttacagc |
42421301 |
T |
|
| Q |
118 |
agaggtgaagaagtttcacaaaacagcagaaaagca |
153 |
Q |
| |
|
||||||||| |||||| ||| ||||||||||||||| |
|
|
| T |
42421300 |
agaggtgaataagttttacagaacagcagaaaagca |
42421265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 45 - 147
Target Start/End: Complemental strand, 43904589 - 43904486
Alignment:
| Q |
45 |
gagtttgagattattaaacaaaaaa-taacatgataacagagcaaacacgacaaagtagaggaagatttacatcagaggtgaagaagtttcacaaaacag |
143 |
Q |
| |
|
|||||||||||| |||||||||||| ||||| |||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
43904589 |
gagtttgagattgttaaacaaaaaaataacaggataactgagcgaacacgacaaagtagaggaagatttacagcagaggtgaagaagtttcacagaacag |
43904490 |
T |
|
| Q |
144 |
caga |
147 |
Q |
| |
|
|||| |
|
|
| T |
43904489 |
caga |
43904486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 261 - 395
Target Start/End: Original strand, 20305416 - 20305562
Alignment:
| Q |
261 |
caaggacaattttgtattttctcttaaaatgaaatagcggttctaaa------------ccgcaaaacagctacgaagcgttgcgccgctatagcaccgc |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||| ||||||||| | ||| ||||||| |||| |
|
|
| T |
20305416 |
caaggacaattttgtattttctcttaaaatgtaatagtggttctaaaccgcaacccagcccgcaaaaccactacgaagctattggccactatagcgccgc |
20305515 |
T |
|
| Q |
349 |
tatctcacaccgcaacgctatggcttgttgcgtagcgctccggcacc |
395 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
20305516 |
tatctcacaccgcaacgctatagcttgttgcgtagcattccggcacc |
20305562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 261 - 395
Target Start/End: Original strand, 21092049 - 21092195
Alignment:
| Q |
261 |
caaggacaattttgtattttctcttaaaatgaaatagcggttctaaa------------ccgcaaaacagctacgaagcgttgcgccgctatagcaccgc |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||| ||||||||| | ||| ||||||| |||| |
|
|
| T |
21092049 |
caaggacaattttgtattttctcttaaaatgtaatagtggttctaaaccgcaacccagcccgcaaaaccactacgaagctattggccactatagcgccgc |
21092148 |
T |
|
| Q |
349 |
tatctcacaccgcaacgctatggcttgttgcgtagcgctccggcacc |
395 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
21092149 |
tatctcacaccgcaacgctatagcttgttgcgtagcattccggcacc |
21092195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 345 - 404
Target Start/End: Original strand, 22894179 - 22894238
Alignment:
| Q |
345 |
ccgctatctcacaccgcaacgctatggcttgttgcgtagcgctccggcaccgcaccgcgc |
404 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
22894179 |
ccgctatctcacaccgcaacattatggcttgttgcgtagcgctccagcaccgcaccgcgc |
22894238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 165 - 231
Target Start/End: Original strand, 22894009 - 22894073
Alignment:
| Q |
165 |
cgttttgcgtaagaatgaaagaaggaagtgagaagctgaactttttagggtttgatgaaaatgtcaa |
231 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||||| || ||||||||||||||||||| |
|
|
| T |
22894009 |
cgttttgcgtaagaatgaaagaaggaa-tg-gaagctgaactttataaggtttgatgaaaatgtcaa |
22894073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 22893758 - 22893802
Alignment:
| Q |
89 |
acacgacaaagtagaggaagatttacatcagaggtgaagaagttt |
133 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
22893758 |
acacgacaaagtagaggaagatttacagcagaggtgaaaaagttt |
22893802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 261 - 313
Target Start/End: Complemental strand, 44412053 - 44412001
Alignment:
| Q |
261 |
caaggacaattttgtattttctcttaaaatgaaatagcggttctaaaccgcaa |
313 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||| |||| ||||| |
|
|
| T |
44412053 |
caaggacaattgtgtattttctcttaaaatgtaatagcggttttaaaacgcaa |
44412001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 5e-61; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 25 - 409
Target Start/End: Original strand, 35716207 - 35716597
Alignment:
| Q |
25 |
aaaaaagtaacaggacaacagagtttgagattattaaacaaaa-aataacatgataacagagcaaacacgacaaagtagaggaagatttac--atcagag |
121 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35716207 |
aaaaaagtaacaggacagtagagtttgagattgttaaacaaaaaaataacaggataacaaagcaaacacgacaaagtagaggaagatttacggtgtagag |
35716306 |
T |
|
| Q |
122 |
gtgaagaagtttcacaaaacagcagaaaagcaaagagaatatg------------------cgttttgcgtaagaatgaaagaaggaagtgagaagctga |
203 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||| |||||| ||| ||||||||| ||||| |||||||||||| |||||||||| |
|
|
| T |
35716307 |
gtgaagaagttttacagaacagcagaaaagcagagagaagatgctttttgcagataaacgccgttttgcgcaagaaagaaagaaggaagagagaagctga |
35716406 |
T |
|
| Q |
204 |
actttttagggtttgatgaaaatgtcaaaaataccctcnnnnnnnnnnnnnnnnnntcaaggacaattttgtattttctcttaaaatgaaatagcggttc |
303 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
35716407 |
actttttagggtttaatgaaaatgtcaaaaataccct----tgtttttttttaaaaccaaggacaattttgtattttctcttaaagtgaaatagcagttc |
35716502 |
T |
|
| Q |
304 |
taaaccgcaaaacagctacgaagcgttgcgccgctatagcaccgctatctcacaccgcaacgctatggcttgttgcgtagcgctccggcaccgcaccgcg |
403 |
Q |
| |
|
|||||| ||||| |||||||||||||||| | ||||||||| ||||||||||||||||||||||||||| || || ||||||||||||| |
|
|
| T |
35716503 |
taaaccacaaaatcgctacgaagcgttgcg-----------ctgctatctcataccgcaacgctatggcttgttgcgtagtgcgccagcaccgcaccgcg |
35716591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 261 - 402
Target Start/End: Complemental strand, 34785433 - 34785303
Alignment:
| Q |
261 |
caaggacaattttgtattttctcttaaaatgaaatagcggttctaaaccgcaaaacagctacgaagcgttgcgccgctatagcaccgctatctcacaccg |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
34785433 |
caaggacaattttgtattttctcttaaaatgaaatagcggttctaaactgcaaaatcgctacgaagcgttgcgccg-----------ctatctcacaccg |
34785345 |
T |
|
| Q |
361 |
caacgctatggcttgttgcgtagcgctccggcaccgcaccgc |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34785344 |
caacgctatggcttgttgcgtagcgctccggcaccgcaccgc |
34785303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 22 - 147
Target Start/End: Original strand, 28999217 - 28999344
Alignment:
| Q |
22 |
aacaaaaaagtaacaggacaacagagttt-gagattattaaacaaaa-aataacatgataacagagcaaacacgacaaagtagaggaagatttacatcag |
119 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
28999217 |
aacaaaaaagtaacaggacaacagagttttgagattgttaaacaaaaaaataacaggataacagagcaaacacgacaaagtagaggaagatttacagcag |
28999316 |
T |
|
| Q |
120 |
aggtgaagaagtttcacaaaacagcaga |
147 |
Q |
| |
|
|||||||||||||| ||| || |||||| |
|
|
| T |
28999317 |
aggtgaagaagttttacagaaaagcaga |
28999344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 22 - 153
Target Start/End: Complemental strand, 34785604 - 34785471
Alignment:
| Q |
22 |
aacaaaaaagtaacaggacaacagagttt-gagattattaaacaaaaaa-taacatgataacagagcaaacacgacaaagtagaggaagatttacatcag |
119 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||| |||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
34785604 |
aacaaaatagtaacaggacaacagagttttgagattgttaaacaaaaaaataacaggataacagagtaaacacgacaaagtagaggaagatttacagcag |
34785505 |
T |
|
| Q |
120 |
aggtgaagaagtttcacaaaacagcagaaaagca |
153 |
Q |
| |
|
|||||||||||||| ||| |||||||| |||||| |
|
|
| T |
34785504 |
aggtgaagaagttttacagaacagcagcaaagca |
34785471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 263 - 409
Target Start/End: Original strand, 28999385 - 28999520
Alignment:
| Q |
263 |
aggacaattttgtattttctcttaaaatgaaatagcggttctaaaccgcaaaacagctacgaagcgttgcgccgctatagcaccgctatctcacaccgca |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||| | |||||||||||||||| |
|
|
| T |
28999385 |
aggacaattttgtattttctcttaaaatgaaatagcggttctaaactgcaaaaccgctacaaagcgttgcg-----------ctgctatctcacaccgca |
28999473 |
T |
|
| Q |
363 |
acgctatggcttgttgcgtagcgctccggcaccgcaccgcgcggccg |
409 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28999474 |
acgttatggcttgttgcgtagcgctccggcaccgcaccgcacggccg |
28999520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 22 - 109
Target Start/End: Original strand, 20655907 - 20655996
Alignment:
| Q |
22 |
aacaaaaaagtaacaggacaacagagttt-gagattattaaacaaaa-aataacatgataacagagcaaacacgacaaagtagaggaaga |
109 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||||||| ||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
20655907 |
aacaaaaaagtaacaggacaacagagttttgagattgttaaacaaaaaaataacaggataacagagcaaacgcgacaaagtagaggaaga |
20655996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 261 - 313
Target Start/End: Original strand, 40119933 - 40119985
Alignment:
| Q |
261 |
caaggacaattttgtattttctcttaaaatgaaatagcggttctaaaccgcaa |
313 |
Q |
| |
|
|||||||||||||||| ||||||||| |||| |||||||||| |||||||||| |
|
|
| T |
40119933 |
caaggacaattttgtaatttctcttagaatgtaatagcggttttaaaccgcaa |
40119985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 357 - 409
Target Start/End: Original strand, 40119979 - 40120031
Alignment:
| Q |
357 |
accgcaacgctatggcttgttgcgtagcgctccggcaccgcaccgcgcggccg |
409 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||| ||||||||| ||||||||| |
|
|
| T |
40119979 |
accgcaacgctatggcttgttgcgcggcggtcccgcaccgcacagcgcggccg |
40120031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 8e-60; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 261 - 402
Target Start/End: Complemental strand, 14400562 - 14400421
Alignment:
| Q |
261 |
caaggacaattttgtattttctcttaaaatgaaatagcggttctaaaccgcaaaacagctacgaagcgttgcgccgctatagcaccgctatctcacaccg |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| || | ||||||||||| |
|
|
| T |
14400562 |
caaggacaattttgtattttctcttaaaatgaaatagcggttctaaaccgcaaaactgctacgaagggttgcgccgctatagctccaccatctcacaccg |
14400463 |
T |
|
| Q |
361 |
caacgctatggcttgttgcgtagcgctccggcaccgcaccgc |
402 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14400462 |
caacactatggcttgttgcgtagcgctccggcaccgcaccgc |
14400421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 22 - 172
Target Start/End: Complemental strand, 11194839 - 11194691
Alignment:
| Q |
22 |
aacaaaaaagtaacaggacaacagagtttgagattattaaacaaaaaa-taacatgataacagagcaaacacgacaaagtagaggaagatttacatcaga |
120 |
Q |
| |
|
||||||||||||| |||||| |||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
11194839 |
aacaaaaaagtaataggaca---gagtttgagattgttaaacaaaaaaataacaggataacagagcaaacacgacaaagtagaggaagatttacagcaga |
11194743 |
T |
|
| Q |
121 |
ggtgaagaagtttcacaaaacagcagaaaagcaaagagaatatgcgttttgc |
172 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||| || |||||||| |
|
|
| T |
11194742 |
ggtgaagaagtttcacagaacagcagaaaagcagagagaagatacgttttgc |
11194691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 22 - 153
Target Start/End: Complemental strand, 14400734 - 14400601
Alignment:
| Q |
22 |
aacaaaaaagtaacaggacaacagagttt-gagattattaaacaaaaaa-taacatgataacagagcaaacacgacaaagtagaggaagatttacatcag |
119 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||| |||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
14400734 |
aacaaaaaagtaacaggacaatagagttttgagattgttaaacaaaaaaataacaggataacagagtaaacacgacaaagtagaggaagatttacagcag |
14400635 |
T |
|
| Q |
120 |
aggtgaagaagtttcacaaaacagcagaaaagca |
153 |
Q |
| |
|
|||||||||||||| || ||||||||||||||| |
|
|
| T |
14400634 |
aggtgaagaagttttccagaacagcagaaaagca |
14400601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 261 - 405
Target Start/End: Complemental strand, 13090821 - 13090688
Alignment:
| Q |
261 |
caaggacaattttgtattttctcttaaaatgaaatagcggttctaaaccgcaaaacagctacgaagcgttgcgccgctatagcaccgctatctcacaccg |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||| | |
|
|
| T |
13090821 |
caaggacaattttgtattttctcttaaaatgaaatagcagttctaaaccgcaaaaccgctacgaagcgttgcgccg-----------ctatctcacactg |
13090733 |
T |
|
| Q |
361 |
caacgctatggcttgttgcgtagcgctccggcaccgcaccgcgcg |
405 |
Q |
| |
|
||| | ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
13090732 |
caatgttatggcttgttgcgtagcgcttcggcaccgcaccgcgcg |
13090688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 22 - 156
Target Start/End: Complemental strand, 13090993 - 13090857
Alignment:
| Q |
22 |
aacaaaaaagtaacaggacaacagagttt-gagattattaaacaaaaaa-taacatgataacagagcaaacacgacaaagtagaggaagatttacatcag |
119 |
Q |
| |
|
||||||||||||||| ||||||| ||||| |||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
13090993 |
aacaaaaaagtaacaagacaacaaagttttgagattgttaaacaaaaaaataacagaataacagagcaaacacgacaaagtagaggaagatttacagcaa |
13090894 |
T |
|
| Q |
120 |
aggtgaagaagtttcacaaaacagcagaaaagcaaag |
156 |
Q |
| |
|
|| ||||||||||| | ||||||| |||||||||| |
|
|
| T |
13090893 |
agatgaagaagttttgtagaacagcaaaaaagcaaag |
13090857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 165 - 240
Target Start/End: Complemental strand, 11194673 - 11194598
Alignment:
| Q |
165 |
cgttttgcgtaagaatgaaagaaggaagtgagaagctgaactttttagggtttgatgaaaatgtcaaaaataccct |
240 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
11194673 |
cgttttgcgtaagaatgaaagaaggaagagagaagctaaactttttaggatttgatgaaaatgtaaaaaataccct |
11194598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 2e-57; HSPs: 13)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 265 - 402
Target Start/End: Original strand, 22546833 - 22546970
Alignment:
| Q |
265 |
gacaattttgtattttctcttaaaatgaaatagcggttctaaaccgcaaaacagctacgaagcgttgcgccgctatagcaccgctatctcacaccgcaac |
364 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||| | |||||||| |||||||||||||||||||| |
|
|
| T |
22546833 |
gacaattttgtagtttctcttaaaatgaaatagcggttctaaaccgcaaaaccgccacgaagcgttgcactgctatagcgccgctatctcacaccgcaac |
22546932 |
T |
|
| Q |
365 |
gctatggcttgttgcgtagcgctccggcaccgcaccgc |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22546933 |
gctatggcttgttgcgtagcgctccggcaccgcaccgc |
22546970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 22 - 153
Target Start/End: Original strand, 29391405 - 29391538
Alignment:
| Q |
22 |
aacaaaaaagtaacaggacaacagagttt-gagattattaaacaaaa-aataacatgataacagagcaaacacgacaaagtagaggaagatttacatcag |
119 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
29391405 |
aacaaaaaagtaacaggacaacagagttttgagattgttaaacaaaaaaataacaggataacagagcaaacacgacaaagtagaggaagatttacagcag |
29391504 |
T |
|
| Q |
120 |
aggtgaagaagtttcacaaaacagcagaaaagca |
153 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||| |
|
|
| T |
29391505 |
aggtgaagaagttttacagaacagcagaaaagca |
29391538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 261 - 424
Target Start/End: Original strand, 29391577 - 29391734
Alignment:
| Q |
261 |
caaggacaattttgtattttctcttaaaatgaaatagcggttctaaaccgcaaaacagctacgaagcgttgcgccgctatagcaccgctatctcacaccg |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||| |
|
|
| T |
29391577 |
caaggacaattttgtattttctcttaaaatgaaatagcggttctaaaccgcaaaaccgctacgaagcattgcg-----------ccgctatctcacaccg |
29391665 |
T |
|
| Q |
361 |
caacgctatggcttgttgcgtagcgctccg-----gcaccgcaccgcgcggccggtattgactactatg |
424 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
29391666 |
caacgctatggctttttgcgtagcgctccggcaccgcaccgcaccgcgcggccgctattgactactatg |
29391734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 261 - 402
Target Start/End: Original strand, 43959535 - 43959668
Alignment:
| Q |
261 |
caaggacaattttgtattttctcttaaaatgaaatagcggttctaaaccgcaaaacagctacgaagcgttgcgccgctatagcaccgctatctcacaccg |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| | ||||||||||||| |
|
|
| T |
43959535 |
caaggacaattttgtattttctcttaaaatgaaatagcggttctaaaccgc--------tacgaagccttgcgccgctatagcgcttctatctcacaccg |
43959626 |
T |
|
| Q |
361 |
caacgctatggcttgttgcgtagcgctccggcaccgcaccgc |
402 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
43959627 |
caacgctatggcttgttgcgtagcgctccagcaccgcaccgc |
43959668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 22 - 153
Target Start/End: Original strand, 22546658 - 22546791
Alignment:
| Q |
22 |
aacaaaaaagtaacaggacaacagagttt-gagattattaaacaaaa-aataacatgataacagagcaaacacgacaaagtagaggaagatttacatcag |
119 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
22546658 |
aacaaaaaagtaacaggacaacagagttttgagattgttaaacaaaaaaataacaggataacagagtaaacacgacaaagtagaggaagatttacagcag |
22546757 |
T |
|
| Q |
120 |
aggtgaagaagtttcacaaaacagcagaaaagca |
153 |
Q |
| |
|
| |||||||||||| ||| ||||||||||||||| |
|
|
| T |
22546758 |
aagtgaagaagtttaacagaacagcagaaaagca |
22546791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 22 - 153
Target Start/End: Complemental strand, 45224265 - 45224132
Alignment:
| Q |
22 |
aacaaaaaagtaacaggacaacagagttt-gagattattaaacaaaaaa-taacatgataacagagcaaacacgacaaagtagaggaagatttacatcag |
119 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||||||||| ||||| | |||||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
45224265 |
aacaaaaaagtaacaggacaacagagttttgagattgttaaacaaaaaaataacagggtaacagagcaaacacgacaaagcagaggaagatttacaacag |
45224166 |
T |
|
| Q |
120 |
aggtgaagaagtttcacaaaacagcagaaaagca |
153 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||| |
|
|
| T |
45224165 |
aggtgaagaagttttacagaacagcagaaaagca |
45224132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 22 - 154
Target Start/End: Original strand, 43959406 - 43959537
Alignment:
| Q |
22 |
aacaaaaaagtaacaggacaacagagttt-gagattattaaacaaaa-aataacatgataacagagcaaacacgacaaagtagaggaagatttacatcag |
119 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
43959406 |
aacaaaaaagtaacaggacaacagagttttgagattgttaaacaaaaaaataacaggataacagagcaaacacgacaaagtagaggaagattta---cag |
43959502 |
T |
|
| Q |
120 |
aggtgaagaagtttcacaaaacagcagaaaagcaa |
154 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||| |
|
|
| T |
43959503 |
aggtgaagaagttttacagaacagcagaaaagcaa |
43959537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 261 - 402
Target Start/End: Complemental strand, 45224096 - 45223966
Alignment:
| Q |
261 |
caaggacaattttgtattttctcttaaaatgaaatagcggttctaaaccgcaaaacagctacgaagcgttgcgccgctatagcaccgctatctcacaccg |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||| ||||||||||| | |
|
|
| T |
45224096 |
caaggacaattttgtattttctcttaaaatgaaatagcggttctaaaccacaaaaccgctgtgaagcgttgcgccg-----------ctatctcacactg |
45224008 |
T |
|
| Q |
361 |
caacgctatggcttgttgcgtagcgctccggcaccgcaccgc |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45224007 |
caacgctatggcttgttgcgtagcgctccggcaccgcaccgc |
45223966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 261 - 399
Target Start/End: Original strand, 16939519 - 16939642
Alignment:
| Q |
261 |
caaggacaattttgtattttctcttaaaatgaaatagcggttctaaaccgcaaaacagctacgaagcgttgcgccgctatagcaccgctatctcacaccg |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||| | |
|
|
| T |
16939519 |
caaggacaattttgtattttctcttaaaatgaaatagcggttctaaacc--------gctacgaagcgtt-------tatatcaccgctatctcacactg |
16939603 |
T |
|
| Q |
361 |
caacgctatggcttgttgcgtagcgctccggcaccgcac |
399 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
16939604 |
caatgctatggcttgttgcgtagcgctccggcaccgcac |
16939642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 261 - 399
Target Start/End: Original strand, 17010184 - 17010307
Alignment:
| Q |
261 |
caaggacaattttgtattttctcttaaaatgaaatagcggttctaaaccgcaaaacagctacgaagcgttgcgccgctatagcaccgctatctcacaccg |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||| | |
|
|
| T |
17010184 |
caaggacaattttgtattttctcttaaaatgaaatagcggttctaaacc--------gctacgaagcgtt-------tatatcaccgctatctcacactg |
17010268 |
T |
|
| Q |
361 |
caacgctatggcttgttgcgtagcgctccggcaccgcac |
399 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
17010269 |
caatgctatggcttgttgcgtagcgctccggcaccgcac |
17010307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 22 - 156
Target Start/End: Original strand, 16939353 - 16939487
Alignment:
| Q |
22 |
aacaaaaaagtaacaggacaacagagtt-tgagattattaaaca-aaaaataacatgataacagagcaaacacgacaaagtagaggaagatttacatcag |
119 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||| ||||||| |||||||||| ||||| || |||||||||||||||||||||||||||||| ||| |
|
|
| T |
16939353 |
aacacaaaagtaacaggacaacagagttctgagattgttaaacacaaaaataacaggataatag--caaacacgacaaagtagaggaagatttacaacag |
16939450 |
T |
|
| Q |
120 |
aggtgaagaagtttcacaaaacagcagaaaagcaaag |
156 |
Q |
| |
|
||||||| ||||| ||| |||| || |||||||||| |
|
|
| T |
16939451 |
aggtgaaaaagttatacagaacatcaaaaaagcaaag |
16939487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 22 - 156
Target Start/End: Original strand, 17010018 - 17010152
Alignment:
| Q |
22 |
aacaaaaaagtaacaggacaacagagtt-tgagattattaaaca-aaaaataacatgataacagagcaaacacgacaaagtagaggaagatttacatcag |
119 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||| ||||||| |||||||||| ||||| || |||||||||||||||||||||||||||||| ||| |
|
|
| T |
17010018 |
aacacaaaagtaacaggacaacagagttctgagattgttaaacacaaaaataacaggataatag--caaacacgacaaagtagaggaagatttacaacag |
17010115 |
T |
|
| Q |
120 |
aggtgaagaagtttcacaaaacagcagaaaagcaaag |
156 |
Q |
| |
|
||||||| ||||| ||| |||| || |||||||||| |
|
|
| T |
17010116 |
aggtgaaaaagttatacagaacatcaaaaaagcaaag |
17010152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 573 - 658
Target Start/End: Original strand, 15556081 - 15556167
Alignment:
| Q |
573 |
gcttcacaatgtgattgcatgccagaatcaaaatatagacatca-ttcaaatttgtcgtaagcttcttcctttgtctgaacaaaact |
658 |
Q |
| |
|
|||| |||||||| ||||||||||| || ||||||||||||| | || |||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
15556081 |
gctttacaatgtggttgcatgccagtatgaaaatatagacattaattaaaatttgtcggaagcttcttcctttgtctgcgcaaaact |
15556167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 94; Significance: 2e-45; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 22 - 153
Target Start/End: Complemental strand, 157334 - 157201
Alignment:
| Q |
22 |
aacaaaaaagtaacaggacaacagagttt-gagattattaaacaaaaaa-taacatgataacagagcaaacacgacaaagtagaggaagatttacatcag |
119 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
157334 |
aacaaaaaagtaacaggacaacaaagttttgagatttttaaacaaaaaaataacaggataacagagcaaacacgacaaagtagaggaagatttacagcag |
157235 |
T |
|
| Q |
120 |
aggtgaagaagtttcacaaaacagcagaaaagca |
153 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||| |
|
|
| T |
157234 |
aggtgaagaagttttacagaacagcagaaaagca |
157201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 261 - 402
Target Start/End: Complemental strand, 157160 - 157030
Alignment:
| Q |
261 |
caaggacaattttgtattttctcttaaaatgaaatagcggttctaaaccgcaaaacagctacgaagcgttgcgccgctatagcaccgctatctcacaccg |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||| || ||||||||||||| |
|
|
| T |
157160 |
caaggacaattttgtattttctcttaaaatgaaatagcggttctagacctcaaaaccgctacgaagcgttgcg-----------ccactatctcacaccg |
157072 |
T |
|
| Q |
361 |
caacgctatggcttgttgcgtagcgctccggcaccgcaccgc |
402 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
157071 |
caacgctatggcttgttgcgtagcgctcaggaaccgcaccgc |
157030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 2e-45; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 22 - 153
Target Start/End: Original strand, 42364033 - 42364166
Alignment:
| Q |
22 |
aacaaaaaagtaacaggacaacagagttt-gagattattaaacaaaa-aataacatgataacagagcaaacacgacaaagtagaggaagatttacatcag |
119 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
42364033 |
aacaaaaaagtaacaggacaacagagttttgagattgttaaacaaaaaaataacaggataacagagcaaacacgacaaagtagaggaagatttacagcag |
42364132 |
T |
|
| Q |
120 |
aggtgaagaagtttcacaaaacagcagaaaagca |
153 |
Q |
| |
|
||||||| |||||| ||| ||||||||||||||| |
|
|
| T |
42364133 |
aggtgaaaaagttttacagaacagcagaaaagca |
42364166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 22 - 153
Target Start/End: Complemental strand, 11276223 - 11276090
Alignment:
| Q |
22 |
aacaaaaaagtaacaggacaacagagtt-tgagattattaaacaaaaaa-taacatgataacagagcaaacacgacaaagtagaggaagatttacatcag |
119 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||| |||||||||||| ||||| ||||| |||||||| |||| ||||||||||||||||||| ||| |
|
|
| T |
11276223 |
aacaaaaaagtaacagaacaacagagttatgagattgttaaacaaaaaaataacaagataatagagcaaatgcgacgaagtagaggaagatttacagcag |
11276124 |
T |
|
| Q |
120 |
aggtgaagaagtttcacaaaacagcagaaaagca |
153 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||| |
|
|
| T |
11276123 |
aggtgaagaagttttacagaacagcagaaaagca |
11276090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 261 - 397
Target Start/End: Original strand, 42364208 - 42364325
Alignment:
| Q |
261 |
caaggacaattttgtattttctcttaaaatgaaatagcggttctaaaccgcaaaacagctacgaagcgttgcgccgctatagcaccgctatctcacaccg |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||| |
|
|
| T |
42364208 |
caaggacaattttgtattttctcttaaaatgaaatagcggttctaaacc--------gctaggaagcgttgcg-----------ccgctatctcacaccg |
42364288 |
T |
|
| Q |
361 |
caacgctatggcttgttgcgtagcgctccggcaccgc |
397 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
42364289 |
caacgctatggattgttgtgtagcgctccggcaccgc |
42364325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 357 - 409
Target Start/End: Complemental strand, 11276006 - 11275954
Alignment:
| Q |
357 |
accgcaacgctatggcttgttgcgtagcgctccggcaccgcaccgcgcggccg |
409 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| || |||||| |
|
|
| T |
11276006 |
accgcaacgctatggcttgttgcgtagcactccggcaccgcactgcacggccg |
11275954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 261 - 306
Target Start/End: Complemental strand, 11276051 - 11276006
Alignment:
| Q |
261 |
caaggacaattttgtattttctcttaaaatgaaatagcggttctaa |
306 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
11276051 |
caaggacaattttgtattttctcttgaaacgaaatagcggttctaa |
11276006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0368 (Bit Score: 93; Significance: 7e-45; HSPs: 2)
Name: scaffold0368
Description:
Target: scaffold0368; HSP #1
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 23 - 153
Target Start/End: Complemental strand, 4826 - 4694
Alignment:
| Q |
23 |
acaaaaaagtaacaggacaacagagttt-gagattattaaacaaaaaa-taacatgataacagagcaaacacgacaaagtagaggaagatttacatcaga |
120 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
4826 |
acaaaaaagtaacaggacaacagagttttgagattgttaaacaaaaaaataacaggataacagagcaaacacgacaaagtagaggaatatttacagcaga |
4727 |
T |
|
| Q |
121 |
ggtgaagaagtttcacaaaacagcagaaaagca |
153 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||| |
|
|
| T |
4726 |
ggtgaagaagttttacagaacagcagaaaagca |
4694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0368; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 261 - 402
Target Start/End: Complemental strand, 4654 - 4524
Alignment:
| Q |
261 |
caaggacaattttgtattttctcttaaaatgaaatagcggttctaaaccgcaaaacagctacgaagcgttgcgccgctatagcaccgctatctcacaccg |
360 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
4654 |
caaggacacttttgtattttctcttaaaatgaaatagcggttctaaaccgcaaaaccgctacgaagcgttgcgccg-----------ctatctcacaccg |
4566 |
T |
|
| Q |
361 |
caacgctatggcttgttgcgtagcgctccggcaccgcaccgc |
402 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4565 |
caacgctatggcttgttgagtagcgctccggcaccgcaccgc |
4524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0743 (Bit Score: 83; Significance: 6e-39; HSPs: 2)
Name: scaffold0743
Description:
Target: scaffold0743; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 261 - 409
Target Start/End: Complemental strand, 2870 - 2733
Alignment:
| Q |
261 |
caaggacaattttgtattttctcttaaaatgaaatagcggttctaaaccgcaaaacagctacgaagcgttgcgccgctatagcaccgctatctcacaccg |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||| | |
|
|
| T |
2870 |
caaggacaattttgtattttctcttaaaatgaaatagcggttctaaaccgcaaaaccgctacgaagccttgcgccg-----------ctatctcacactg |
2782 |
T |
|
| Q |
361 |
caacgctatggcttgttgcgtagcgctccggcaccgcaccgcgcggccg |
409 |
Q |
| |
|
||||||||||||||||||| |||||||||| || ||| ||||||||||| |
|
|
| T |
2781 |
caacgctatggcttgttgcatagcgctccgacaacgctccgcgcggccg |
2733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0743; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 22 - 130
Target Start/End: Complemental strand, 3004 - 2902
Alignment:
| Q |
22 |
aacaaaaaagtaacaggacaacagagttt-gagattattaaacaaaaaataacatgataacagagcaaacacgacaaagtagaggaagatttacatcaga |
120 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
3004 |
aacaaaaaagtaacaggacaacaaagttttgagattgttaaacaaaaaa-------ataacagagcaaacacgacaaagtagaggaagatttacagcata |
2912 |
T |
|
| Q |
121 |
ggtgaagaag |
130 |
Q |
| |
|
| |||||||| |
|
|
| T |
2911 |
gatgaagaag |
2902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0583 (Bit Score: 78; Significance: 6e-36; HSPs: 2)
Name: scaffold0583
Description:
Target: scaffold0583; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 22 - 153
Target Start/End: Complemental strand, 5378 - 5245
Alignment:
| Q |
22 |
aacaaaaaagtaacaggacaacagagttt-gagattattaaacaaaaaa-taacatgataacagagcaaacacgacaaagtagaggaagatttacatcag |
119 |
Q |
| |
|
||||||||||||||| ||||||| ||||| |||||| |||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
5378 |
aacaaaaaagtaacaagacaacatagttttgagattgttaaacaaaaaaataacaggataacagagcaaacaagacaaagtagaggaagatttacagcag |
5279 |
T |
|
| Q |
120 |
aggtgaagaagtttcacaaaacagcagaaaagca |
153 |
Q |
| |
|
|||||||||||||| ||| || |||| ||||||| |
|
|
| T |
5278 |
aggtgaagaagttttacagaatagcaaaaaagca |
5245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0583; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 261 - 390
Target Start/End: Complemental strand, 5206 - 5089
Alignment:
| Q |
261 |
caaggacaattttgtattttctcttaaaatgaaatagcggttctaaaccgcaaaacagctacgaagcgttgcgccgctatagcaccgctatctcacaccg |
360 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||| || |||||||||| ||||||||||| | |
|
|
| T |
5206 |
caaggacaattttgtattttct-ttaaaatgaaatagcagttctagaccgcaaaacagctacaaaccgttgcgccg-----------ctatctcacactg |
5119 |
T |
|
| Q |
361 |
caacgctatggcttgttgcgtagcgctccg |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
5118 |
caacgctatggcttgttgcgtagcgctccg |
5089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 166 - 241
Target Start/End: Original strand, 18179 - 18256
Alignment:
| Q |
166 |
gttttgcgtaagaatgaaagaaggaagt--gagaagctgaactttttagggtttgatgaaaatgtcaaaaataccctc |
241 |
Q |
| |
|
|||||||||||||||||| ||| |||| ||||| ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
18179 |
gttttgcgtaagaatgaatgaaagaaggaagagaaactgaactttttagggtttgatgaaactgtcaaaaataccctc |
18256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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