View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10702_low_11 (Length: 362)
Name: NF10702_low_11
Description: NF10702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10702_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 28 - 333
Target Start/End: Original strand, 2675061 - 2675384
Alignment:
| Q |
28 |
atgatgttgttggtgcttcctcccgccgctttgtctagagcttcttgaacaactcgttcggattcagaatcaagtgcgcttgttgcttcatctagtaata |
127 |
Q |
| |
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|||||| || |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2675061 |
atgatgatggtggtgcgtccaaccgccgctttgtctagagcttcttgaacaactcgttcggattcagaatcaagtgcacttgttgcttcatctagtaata |
2675160 |
T |
|
| Q |
128 |
aaattttaggcatttttattacggctcttgcaatggcaatcctttgtttttgtccccctgacatctgaactcctctctccccaacctgtagtaataaaca |
227 |
Q |
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|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2675161 |
aaattttaggcatttttattatggctcttgcaatggcaatcctttgtttttgtccccctgacatctgaactcctctctccccaacctgtagtaataaaca |
2675260 |
T |
|
| Q |
228 |
ttaacatcttaatttaaacttaat-----------taatggctttaccatttcgtctatct-------nnnnnnnntagaaataaattgtaaagaattgg |
309 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
2675261 |
ttaacatcttaatttaaacttaattaatgactttataatggctttgccatttcgtctatctacaaaaaaaaaaaaatagaaataaattgtaaagaattgg |
2675360 |
T |
|
| Q |
310 |
attaattaattaatcaagattttt |
333 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
2675361 |
attaattaattaatcaagattttt |
2675384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 56 - 228
Target Start/End: Original strand, 2643240 - 2643412
Alignment:
| Q |
56 |
ctttgtctagagcttcttgaacaactcgttcggattcagaatcaagtgcgcttgttgcttcatctagtaataaaattttaggcatttttattacggctct |
155 |
Q |
| |
|
||||||||||||| ||||| |||| |||||||||||||||||||||||| ||||| ||||| || | ||||||||||||||||||||||||| |||||| |
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| T |
2643240 |
ctttgtctagagcgtcttggacaattcgttcggattcagaatcaagtgcacttgtcgcttcgtccaacaataaaattttaggcatttttattatggctct |
2643339 |
T |
|
| Q |
156 |
tgcaatggcaatcctttgtttttgtccccctgacatctgaactcctctctccccaacctgtagtaataaacat |
228 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
2643340 |
tgcaatggcaatcctttgtttttgcccccctgacatttgaactcctctctccccaacctgtagtagtaaacat |
2643412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 55 - 224
Target Start/End: Complemental strand, 2436024 - 2435855
Alignment:
| Q |
55 |
gctttgtctagagcttcttgaacaactcgttcggattcagaatcaagtgcgcttgttgcttcatctagtaataaaattttaggcatttttattacggctc |
154 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||||| || || ||||||||||| ||||| |||| |||||| |||||||||| || ||||| |
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| T |
2436024 |
gctttgtctagagcttcttggacaactcgttcagattcagaatcgagagcacttgttgcttcgtctagcaatagaatttttggcatttttactatggctc |
2435925 |
T |
|
| Q |
155 |
ttgcaatggcaatcctttgtttttgtccccctgacatctgaactcctctctccccaacctgtagtaataa |
224 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||| |||| ||| ||||||||||||||||||||||| |
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|
| T |
2435924 |
ttgcaatggcaatcctttgcttttgtcccccagacatttgaattcccctctccccaacctgtagtaataa |
2435855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 55 - 228
Target Start/End: Original strand, 2571597 - 2571770
Alignment:
| Q |
55 |
gctttgtctagagcttcttgaacaactcgttcggattcagaatcaagtgcgcttgttgcttcatctagtaataaaattttaggcatttttattacggctc |
154 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||| ||||| ||||||||||| |||| |||| |||||| ||||||||||| | ||||| |
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| T |
2571597 |
gctttgtctagagcttcttggacgactcgttcggattcagaatcgagtgcacttgttgcttcgtctaacaatagaatttttggcatttttatgatggctc |
2571696 |
T |
|
| Q |
155 |
ttgcaatggcaatcctttgtttttgtccccctgacatctgaactcctctctccccaacctgtagtaataaacat |
228 |
Q |
| |
|
||||||| ||||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||||| ||||||| |
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| T |
2571697 |
ttgcaattgcaattctttgcttttgtccccctgacatttgaactcccctctccccaacctgtagtagtaaacat |
2571770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 55 - 228
Target Start/End: Original strand, 2598350 - 2598523
Alignment:
| Q |
55 |
gctttgtctagagcttcttgaacaactcgttcggattcagaatcaagtgcgcttgttgcttcatctagtaataaaattttaggcatttttattacggctc |
154 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||| ||||| ||||||||||| |||| |||| |||||| ||||||||||| | ||||| |
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|
| T |
2598350 |
gctttgtctagagcttcttggacgactcgttcggattcagaatcgagtgcacttgttgcttcgtctaacaatagaatttttggcatttttatgatggctc |
2598449 |
T |
|
| Q |
155 |
ttgcaatggcaatcctttgtttttgtccccctgacatctgaactcctctctccccaacctgtagtaataaacat |
228 |
Q |
| |
|
||||||| ||||| ||||| ||||||||||||||||| || ||||| ||||||||||||||||||| ||||||| |
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|
| T |
2598450 |
ttgcaattgcaattctttgcttttgtccccctgacatttgtactcccctctccccaacctgtagtagtaaacat |
2598523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 55 - 225
Target Start/End: Complemental strand, 2589854 - 2589684
Alignment:
| Q |
55 |
gctttgtctagagcttcttgaacaactcgttcggattcagaatcaagtgcgcttgttgcttcatctagtaataaaattttaggcatttttattacggctc |
154 |
Q |
| |
|
|||||||||||||||||||| ||||| | ||| ||||||||||| ||||| ||||||||||||||||| |||| |||||| ||||||||||| | |||| |
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|
| T |
2589854 |
gctttgtctagagcttcttggacaaccctttctgattcagaatcgagtgcacttgttgcttcatctagcaatagaatttttggcatttttatgatagctc |
2589755 |
T |
|
| Q |
155 |
ttgcaatggcaatcctttgtttttgtccccctgacatctgaactcctctctccccaacctgtagtaataaa |
225 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||| || ||||||||||| | ||||||||||| |||| |
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| T |
2589754 |
ttgcaatggcaatcctttgcttttgcccccctgacatttgtactcctctctctctaacctgtagtagtaaa |
2589684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 55 - 225
Target Start/End: Complemental strand, 2621421 - 2621251
Alignment:
| Q |
55 |
gctttgtctagagcttcttgaacaactcgttcggattcagaatcaagtgcgcttgttgcttcatctagtaataaaattttaggcatttttattacggctc |
154 |
Q |
| |
|
|||||||||| ||||||||| ||||||| ||||||||||||||| ||||| ||||||||||||||||| || | |||||| ||||||||||| | |||| |
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|
| T |
2621421 |
gctttgtctaaagcttcttggacaactctttcggattcagaatctagtgcacttgttgcttcatctagcaaaagaatttttggcatttttatgatagctc |
2621322 |
T |
|
| Q |
155 |
ttgcaatggcaatcctttgtttttgtccccctgacatctgaactcctctctccccaacctgtagtaataaa |
225 |
Q |
| |
|
||||||||| ||||||||| ||||| ||||| ||||| ||||||||||||||||||||||| |||| |||| |
|
|
| T |
2621321 |
ttgcaatggaaatcctttgcttttgccccccagacatttgaactcctctctccccaacctgcagtagtaaa |
2621251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 66 - 225
Target Start/End: Complemental strand, 2449192 - 2449033
Alignment:
| Q |
66 |
agcttcttgaacaactcgttcggattcagaatcaagtgcgcttgttgcttcatctagtaataaaattttaggcatttttattacggctcttgcaatggca |
165 |
Q |
| |
|
||||||||| |||||||||||||||||| |||| ||||| ||||||||||| ||||| |||| |||| | || |||| |||| |||||||||||||| | |
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|
| T |
2449192 |
agcttcttggacaactcgttcggattcaaaatctagtgcacttgttgcttcgtctagcaatagaattcttggatttttgattatggctcttgcaatggaa |
2449093 |
T |
|
| Q |
166 |
atcctttgtttttgtccccctgacatctgaactcctctctccccaacctgtagtaataaa |
225 |
Q |
| |
|
|||||||| ||||||||||||||||| || ||||| ||||||||||||| ||||| |||| |
|
|
| T |
2449092 |
atcctttgcttttgtccccctgacatttgtactcccctctccccaacctatagtagtaaa |
2449033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 3431228 - 3431292
Alignment:
| Q |
151 |
gctcttgcaatggcaatcctttgtttttgtccccctgacatctgaactcctctctccccaacctg |
215 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| || || | |||||||||| ||| |||||||| |
|
|
| T |
3431228 |
gctcttgcaattgcaatcctttgcttttgtccaccagataattgaactcctcgctcaccaacctg |
3431292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 179
Target Start/End: Complemental strand, 27731374 - 27731253
Alignment:
| Q |
58 |
ttgtctagagcttcttgaacaactcgttcggattcagaatcaagtgcgcttgttgcttcatctagtaataaaattttaggcatttttattacggctcttg |
157 |
Q |
| |
|
||||||| ||||| ||| ||||| ||||| ||||| ||| ||||| |||||||||||||| || ||||| |||||||| || ||| | ||||||| |
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|
| T |
27731374 |
ttgtctaaagcttgttgtacaacacgttccgattcgacatctagtgcacttgttgcttcatcaagcaataatattttagggtttcttaaaatagctcttg |
27731275 |
T |
|
| Q |
158 |
caatggcaatcctttgtttttg |
179 |
Q |
| |
|
||||||| | |||||| ||||| |
|
|
| T |
27731274 |
caatggccaccctttgcttttg |
27731253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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