View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10702_low_12 (Length: 360)
Name: NF10702_low_12
Description: NF10702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10702_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 218 - 357
Target Start/End: Original strand, 27101166 - 27101305
Alignment:
| Q |
218 |
tatcaacgtcatctccttcaatgtccatctgctcattcaccatcatcggtaaatagagcaacttgtaaatttgattcatcaagagacaaggatgtaactt |
317 |
Q |
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| T |
27101166 |
tatcaacgtcatctccttcaatgtccatctgctcattcaccatcatcggtaaatagagcaacttctaaatttgattcatcaagagacaaggatgtaactt |
27101265 |
T |
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| Q |
318 |
caagagttccaacaccatcaaagctttcctatgcttctcc |
357 |
Q |
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| T |
27101266 |
caagagttccaacaccatcaaagctttcccatgcatctcc |
27101305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 11 - 138
Target Start/End: Original strand, 27100959 - 27101086
Alignment:
| Q |
11 |
aacctacctattctactcatcgccctcctttatgctttgggtatgaccacattaaaatctcctcctaaacatcactctatgaagcacggttacgatgcga |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27100959 |
aacctacctattctactcatcgccctcctttatgctttgggtatgaccacattaaaatctcctcctaaacatcactctatgaagcacggttacgatgcga |
27101058 |
T |
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| Q |
111 |
ggtatcggatatgatgatacgtcgctca |
138 |
Q |
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| T |
27101059 |
ggtatcggatatgatgatacgttgctca |
27101086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 243 - 357
Target Start/End: Complemental strand, 28915527 - 28915413
Alignment:
| Q |
243 |
catctgctcattcaccatcatcggtaaatagagcaacttgtaaatttgattcatcaagagacaaggatgtaacttcaagagttccaacaccatcaaagct |
342 |
Q |
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| T |
28915527 |
catctcctccttcaccatcatcagtaaacagaacggcttctaaatttggttcatcaagagacaatgatgcaacttcaagagttccaacaccatcaaagct |
28915428 |
T |
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| Q |
343 |
ttcctatgcttctcc |
357 |
Q |
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|||| |||| ||||| |
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| T |
28915427 |
ttcccatgcatctcc |
28915413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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