View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10702_low_2 (Length: 544)
Name: NF10702_low_2
Description: NF10702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10702_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 20 - 536
Target Start/End: Original strand, 42452711 - 42453227
Alignment:
| Q |
20 |
ggtatcatatgtttgatgacgatccacggtacagcactgatgtgaatccaacagacaatggggtctggagaccaaacattggagtttttgagatggggat |
119 |
Q |
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| T |
42452711 |
ggtatcatatgtttgatgacgatccacggtacagcactgatgtgaatccaacagacaatggggtctggagaccaaacattggagtttttgagatggggat |
42452810 |
T |
|
| Q |
120 |
attgaatgctacaggtcttccagagatgaaacctcaaggtcgcaccgatgcctattgtgtagctaaatatggctcaaaatgggttcggtcaagaactgtt |
219 |
Q |
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| T |
42452811 |
attgaatgctacaggtcttccagagatgaaacctcaaggtcgcaccgatgcctattgtgtagctaaatatggctcaaaatgggttcggtcaagaactgtt |
42452910 |
T |
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| Q |
220 |
gttaatagtctttctccaaagtggaatgagcaatactcttggaaggtctatgatccatctacatttttcattatttctgtgtttgataatagtcaattac |
319 |
Q |
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| T |
42452911 |
gttaatagtctttctccaaagtggaatgagcaatactcttggaaggtctatgatccatctacatttttcattatttctgtgtttgataatagtcaattac |
42453010 |
T |
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| Q |
320 |
atgaagaatatatagctgctggagcaaacgatacaaggatagggaaggtgagaatcagtctatcagaaatggaaatcaacaccgtttacaattattctta |
419 |
Q |
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| T |
42453011 |
atgaagaatatatagctgctggagcaaacgatacaaggatagggaaggtgagaatcagtctatcagaaatggaaatcaacaccgtttacaattattctta |
42453110 |
T |
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| Q |
420 |
tcctcttgttcaacttcaaccttctgggctgaagaagatgggggaaattcaattgtctttcaagtttactagcccttctaaagctaatttgtacaaaaag |
519 |
Q |
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| T |
42453111 |
tcctcttgttcaacttcaaccttctgggctgaagaagatgggggaaattcaattgtctttcaagtttactagcccttctaaagctaatttgtataaaaag |
42453210 |
T |
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| Q |
520 |
tacacagtgcctatgct |
536 |
Q |
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|||||| |||| ||||| |
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| T |
42453211 |
tacacaatgccaatgct |
42453227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 275
Target Start/End: Complemental strand, 27253755 - 27253643
Alignment:
| Q |
163 |
accgatgcctattgtgtagctaaatatggctcaaaatgggttcggtcaagaactgttgttaatagtctttctccaaagtggaatgagcaatactcttgga |
262 |
Q |
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||||| || |||||||||||||| ||||| || |||||||| | |||| ||| ||||| |||||||||| |||| ||||||||||||||| ||||| |
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| T |
27253755 |
accgacgcatattgtgtagctaagtatggttctaaatgggtgagaacaaggactattgttgatagtctttcaccaaggtggaatgagcaatatacttggg |
27253656 |
T |
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| Q |
263 |
aggtctatgatcc |
275 |
Q |
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| || |||||||| |
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| T |
27253655 |
aagtttatgatcc |
27253643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 275
Target Start/End: Complemental strand, 21197913 - 21197801
Alignment:
| Q |
163 |
accgatgcctattgtgtagctaaatatggctcaaaatgggttcggtcaagaactgttgttaatagtctttctccaaagtggaatgagcaatactcttgga |
262 |
Q |
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||||| || |||||||||||||| ||||| || |||||||| | |||| ||| ||||| ||| |||||| |||| ||||||||||||||| ||||| |
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| T |
21197913 |
accgacgcatattgtgtagctaagtatggttctaaatgggtgagaacaaggactattgttgatattctttcaccaaggtggaatgagcaatatacttggg |
21197814 |
T |
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| Q |
263 |
aggtctatgatcc |
275 |
Q |
| |
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| || |||||||| |
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| T |
21197813 |
aagtttatgatcc |
21197801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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