View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10702_low_28 (Length: 243)
Name: NF10702_low_28
Description: NF10702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10702_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 34615116 - 34615348
Alignment:
| Q |
1 |
tattcacttactctattcttctcctccagcatgttaattgcagactgcttctttctctgagggagaggcattttatcagcagcagctttcaaaggatcaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||| ||||||||| |
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| T |
34615116 |
tattcacttactctattcttctcctccagcatgttaattgcagactgtttctttctctgagggagtggcactttatcagcagcagctttcgaaggatcaa |
34615215 |
T |
|
| Q |
101 |
gaacagttaacaactcatcagcacaatcctcgcgttctaagtctccatgaattctcgcaaaatttcgaagagtctcccaaagctcaactccggcttcaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34615216 |
gaacagttaacaactcatcagcacaatcctcgcgttctaagtctccatgaattctcgcaaaatttcgaagagtctcccaaagctcaactccggcttcaat |
34615315 |
T |
|
| Q |
201 |
tggcatattctcaataaactcgtgagcttcatc |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
34615316 |
tggcatattctcaataaactcgtgagcttcatc |
34615348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 34757662 - 34757896
Alignment:
| Q |
1 |
tattcacttactctattcttctcctccagcatgttaattgcagactgcttctttctctgagggagaggcattttatca---gcagcagctttcaaaggat |
97 |
Q |
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||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||| |||| ||||||| |||||||||||| |||||| |
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| T |
34757662 |
tattcacttactctatttttctcctccatcatgttaattgcagactgtttctttctctgagggagtggcactttatcatcagcagcagctttcgaaggat |
34757761 |
T |
|
| Q |
98 |
caagaacagttaacaactcatcagcacaatcctcgcgttctaagtctccatgaattctcgcaaaatttcgaagagtctcccaaagctcaactccggcttc |
197 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
34757762 |
caataacagttaacaactcatcagcacaatcctcgcgttctaagtctccatgaattctcgcaaaatttcaaagagtctcccaaatctcaactccggcttc |
34757861 |
T |
|
| Q |
198 |
aattggcatattctcaataaactcgtgagcttcat |
232 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
34757862 |
aattggcatattctcaataaactcgtgagcttcat |
34757896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 34742556 - 34742785
Alignment:
| Q |
1 |
tattcacttactctattcttctcctccagcatgttaattgcagactgcttctttctctgagggagaggcattttatcagcagcagctttcaaaggatcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34742556 |
tattcacttactctattcttctcctccagcatgttaattgcagactgcttctttctctgagggagaggcattttatcagcagcagctttcgaaggatcac |
34742655 |
T |
|
| Q |
101 |
gaacagttaacaactcatcagcacaatcctcgcgttctaagtctccatgaattctcgcaaaatttcgaagagtctcccaaagctcaactccggcttcaat |
200 |
Q |
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|||||||||||||| | ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
34742656 |
gaacagttaacaac---ttagcacgatcctcgcgttctaagtctccataaattctcgcaaaatttcgaagagtctcccaaacatcaaccccggcttcaat |
34742752 |
T |
|
| Q |
201 |
tggcatattctcaataaactcgtgagcttcatc |
233 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |
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| T |
34742753 |
tggcatattctcaataaactcctgagcttcatc |
34742785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 11542571 - 11542723
Alignment:
| Q |
1 |
tattcacttactctattcttctcctccagcatgttaattgcagactgcttctttctctgagggagaggcattttatcagcagcagctttcaaaggatcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||| ||||||||| |
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| T |
11542571 |
tattcacttactctattcttctcctccagcatgttaattgcagactgtttctttctctgagggagtggcactttatcagcagcagctttcgaaggatcaa |
11542670 |
T |
|
| Q |
101 |
gaacagttaacaactcatcagcacaatcctcgcgttctaagtctccatgaatt |
153 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
11542671 |
gaacagttaacaactcatcagcacaatcctcacgttctaagtctccatgaatt |
11542723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 150 - 233
Target Start/End: Original strand, 11544097 - 11544180
Alignment:
| Q |
150 |
aattctcgcaaaatttcgaagagtctcccaaagctcaactccggcttcaattggcatattctcaataaactcgtgagcttcatc |
233 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11544097 |
aattgtcgcaaaatttcgaagagtctcccaaatctcaactccggcttcaattggcatattctcaataaactcgtgagcttcatc |
11544180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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