View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10702_low_29 (Length: 242)
Name: NF10702_low_29
Description: NF10702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10702_low_29 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 28357980 - 28357756
Alignment:
| Q |
18 |
gtttgaagaaggtgaaggtgttgaaagcattattggaggatccaatactcgcagatgtaccgaagaatccaaccctggaagatgtggaaactctcattgg |
117 |
Q |
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| T |
28357980 |
gtttgaagaaggcgaaggtgttgaaagcattattggaggatccaatactcgcagatgtaccgaagaatccaaccctggaagatgtggaaactctcattgg |
28357881 |
T |
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| Q |
118 |
actcgaattgggtagtgcaatgcgaattacagttttgaaattggatacaacctcgtttgatgtgattctaatgaatacggcaacgctcaaggatttgaaa |
217 |
Q |
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| T |
28357880 |
actcgaattgggtagtgcaatgcgaattacagttttgaaattggatacaacctcgtttgatgtgattctaatgaatacggcaacgctcaaggatttgaaa |
28357781 |
T |
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| Q |
218 |
cttgctatcaagaagaaggttaatt |
242 |
Q |
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| T |
28357780 |
cttgctatcaagaagaaggttaatt |
28357756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 44764481 - 44764257
Alignment:
| Q |
18 |
gtttgaagaaggtgaaggtgttgaaagcattattggaggatccaatactcgcagatgtaccgaagaatccaaccctggaagatgtggaaactctcattgg |
117 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44764481 |
gtttgaagaaggcgaaggtgttgaaagcattattggaggatccaatactcgcagatgtaccgaagaatccaaccctggaagatgtggaaactctcattgg |
44764382 |
T |
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| Q |
118 |
actcgaattgggtagtgcaatgcgaattacagttttgaaattggatacaacctcgtttgatgtgattctaatgaatacggcaacgctcaaggatttgaaa |
217 |
Q |
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| T |
44764381 |
actcgaattgggtagtgcaatgcgaattacagttttgaaattggatacaacctcgtttgatgtgattctaatgaatacggcaacgctcaaggatttgaaa |
44764282 |
T |
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| Q |
218 |
cttgctatcaagaagaaggttaatt |
242 |
Q |
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| T |
44764281 |
cttgctatcaagaagaaggttaatt |
44764257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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