View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10702_low_34 (Length: 237)
Name: NF10702_low_34
Description: NF10702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10702_low_34 |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 2674899 - 2674677
Alignment:
| Q |
1 |
acactccatctatcatgaatagaggtcacatgcaaaacacgagtagtcgtagactcgtaagtcgttctagcagctctttcaactcaatgacacatggtgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2674899 |
acactccatctatcatgaatagaggtcacatgcaaaacacgagtagtcgtagactcgtaagtcgttctagcagctctttcaactcaatgacacatggtgg |
2674800 |
T |
|
| Q |
101 |
tgatgatatccttaattataacaatgttgttgaagatattgttaataatgttgttgtagttgatgatcacaataatcatgatagcataaataacacgaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||| |||||| |
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| T |
2674799 |
tgatgatatccttaattataacaatgttgttgaagatattgttaataatgttgttgtagttgatgatcgcaataatcataatagtataaataatacgaaa |
2674700 |
T |
|
| Q |
201 |
aaggagaaggtcaaggttccttc |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
2674699 |
aaggagaaggtcaaggttccttc |
2674677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 2571408 - 2571230
Alignment:
| Q |
1 |
acactccatctatcatgaatagaggtcacatgcaaaacacgagtagtcgtagactcgtaagtcgttctagcagctctttcaactcaatgacacatggtgg |
100 |
Q |
| |
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|||||||||||||||||||||||| ||||||| ||| |||||||||||||||||| || |||| ||||||| |||||||||||||||||||| ||||| |
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| T |
2571408 |
acactccatctatcatgaatagagatcacatggaaatcacgagtagtcgtagacttgtgagtcattctagc---tctttcaactcaatgacacacggtgg |
2571312 |
T |
|
| Q |
101 |
tgatgatatccttaattataacaatgttgttgaagatattgttaataatgttgttgtagttgatgatcacaataatcatgat |
182 |
Q |
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| T |
2571311 |
tgatgatatcgttaattataacaatgatgttgaagatactgttaataatgatgttgcagttgttgatcacaataataatgat |
2571230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 7 - 223
Target Start/End: Complemental strand, 2643044 - 2642840
Alignment:
| Q |
7 |
catctatcatgaatagaggtcacatgcaaaacacgagtagtcgtagactcgtaagtcgttctagcagctctttcaactcaatgacacatggtggtgatga |
106 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2643044 |
catctatcatgaacagaggtcacatgcaaaacacgagtagtcgtagactcgtgagtcgttct---agctctttcaactcaatgacacatggtggtgatga |
2642948 |
T |
|
| Q |
107 |
tatccttaattataacaatgttgttgaagatattgttaataatgttgttgtagttgatgatcacaataatcatgatagcataaataacacgaaaaaggag |
206 |
Q |
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|||| || ||| ||||||| ||||||||||||||||| ||| ||| ||||||||| |||||| ||||| | |||||| | |||||| ||| |
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| T |
2642947 |
tatc---------aataattttgttgacgatattgttaataatgtagttatagctgatgatcataataataatgatgataaaaataataagaaaaaagag |
2642857 |
T |
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| Q |
207 |
aaggtcaaggttccttc |
223 |
Q |
| |
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|||||||||||| |||| |
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| T |
2642856 |
aaggtcaaggtttcttc |
2642840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 72 - 145
Target Start/End: Original strand, 2436269 - 2436342
Alignment:
| Q |
72 |
agctctttcaactcaatgacacatggtggtgatgatatccttaattataacaatgttgttgaagatattgttaa |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||| ||||||| |
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| T |
2436269 |
agctctttcaactcaatgacacatggtggtggtgatgtcgttaattataacaatgttgttgaagatgttgttaa |
2436342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 2449392 - 2449520
Alignment:
| Q |
1 |
acactccatctatcatgaatagaggtcacatgcaaaacacgagtagtcgtagactcgtaagtcgttctagcagctctttcaactcaatgacacatggtgg |
100 |
Q |
| |
|
|||||||| ||||||||||||||| |||||| ||||||||| ||||| || |||||| ||||||||| ||||||||||||| ||||||||||||| | |
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| T |
2449392 |
acactccacctatcatgaatagagatcacatccaaaacacgtgtagtgatacactcgtgagtcgttct---agctctttcaacttaatgacacatggtag |
2449488 |
T |
|
| Q |
101 |
tgatgatatccttaattataacaatgttgttg |
132 |
Q |
| |
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|| |||| || |||| | |||||||||||||| |
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| T |
2449489 |
tggtgatgtcgttaactgtaacaatgttgttg |
2449520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 2621610 - 2621750
Alignment:
| Q |
1 |
acactccatctatcatgaatagaggtcacatgcaaaacacgagtagtcgtagactcgtaagtcgttctagcagctctttcaactcaatgacacatggtgg |
100 |
Q |
| |
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|||| ||||||||||||||||||| |||||||||||||| |||| || |||||||||| |||| ||| | |||||||||||||| || | || | |
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| T |
2621610 |
acaccccatctatcatgaatagagatcacatgcaaaacatgagtggttgtagactcgtgagtccatct---aactctttcaactcaacaacgcgaggcag |
2621706 |
T |
|
| Q |
101 |
tgatgatatccttaattataacaatgttgttgaagatattgtta |
144 |
Q |
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||||||| | |||||||||||||||| ||||||||| |||||| |
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| T |
2621707 |
tgatgatgtttttaattataacaatgtcgttgaagatgttgtta |
2621750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 2590043 - 2590113
Alignment:
| Q |
1 |
acactccatctatcatgaatagaggtcacatgcaaaacacgagtagtcgtagactcgtaagtcgttctagc |
71 |
Q |
| |
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|||| |||||||||||||||| || |||||||||||||||||||| | |||||||||| |||| ||||||| |
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| T |
2590043 |
acaccccatctatcatgaataaagatcacatgcaaaacacgagtacttgtagactcgttagtccttctagc |
2590113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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