View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10702_low_7 (Length: 424)

Name: NF10702_low_7
Description: NF10702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10702_low_7
NF10702_low_7
[»] chr6 (1 HSPs)
chr6 (14-381)||(2481464-2481831)
[»] chr4 (2 HSPs)
chr4 (14-381)||(12632286-12632653)
chr4 (14-381)||(27107993-27108360)
[»] chr1 (2 HSPs)
chr1 (14-381)||(44680606-44680973)
chr1 (39-381)||(23271873-23272215)
[»] chr3 (2 HSPs)
chr3 (242-379)||(4709008-4709145)
chr3 (283-384)||(4708773-4708873)
[»] chr5 (2 HSPs)
chr5 (284-346)||(39789350-39789412)
chr5 (41-224)||(39789103-39789286)
[»] chr2 (1 HSPs)
chr2 (304-369)||(13510120-13510187)
[»] chr8 (1 HSPs)
chr8 (325-380)||(18616199-18616254)


Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 381
Target Start/End: Complemental strand, 2481831 - 2481464
Alignment:
Q  14 aagccggtaaaaaacgcacctatgattggtttagcaaaccatggttatgttcaacatcaaaggttgtacctcaccactcaattggaaatatatcatgaca 113  Q
    ||||||||||||||||||||| || |||| |||||||||||||||| ||||| |||  ||| | |||  ||| ||||||| ||||||| ||||||||| |    
T  2481831 aagccggtaaaaaacgcacctctgtttgggttagcaaaccatggttgtgttcgacaataaacgatgtgactcgccactcagttggaaacatatcatgaga 2481732  T
Q  114 cttttgtaatttaattagtaaatgagctttgcaatcacactttgacgattctctatttctctgctcttttgatggttccatgaatttcaaggaggctcta 213  Q
     ||||||||||| ||| |||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||| | ||||||||| ||| ||    
T  2481731 tttttgtaatttgattcgtaaatgagctttgcattcacactttgaggattgtctatttctctgctcttttgatggttccattattttcaaggatgcttta 2481632  T
Q  214 ccttcacgatgacnnnnnnnntcacgcctgctcataaccccattcttgtttgtgaatctaccnnnnnnnattgagaacccttgttgataagcatatctct 313  Q
    |||||||||||||        ||||| ||||  |||||||||||||| |||  |||||||||       |||||||||||||||||||||||||||||||    
T  2481631 ccttcacgatgacaaaaaatatcacgtctgcaaataaccccattcttttttacgaatctaccttttttaattgagaacccttgttgataagcatatctct 2481532  T
Q  314 tataaaagacaaatgcttcttcttcactaagaaaaatttgaccaacaaagggaacacaatttgtctca 381  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2481531 tataaaagacataggcttcttcttcactaagaaaaatttgaccaacaaatggaacacaatttgtctca 2481464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 381
Target Start/End: Original strand, 12632286 - 12632653
Alignment:
Q  14 aagccggtaaaaaacgcacctatgattggtttagcaaaccatggttatgttcaacatcaaaggttgtacctcaccactcaattggaaatatatcatgaca 113  Q
    ||||||||||||||||||||| || |||| |||||||||||||||| ||||| |||  ||| | |||  ||| ||||||| ||||||| ||||||||| |    
T  12632286 aagccggtaaaaaacgcacctctgtttgggttagcaaaccatggttgtgttcgacaataaacgatgtgactcgccactcagttggaaacatatcatgaga 12632385  T
Q  114 cttttgtaatttaattagtaaatgagctttgcaatcacactttgacgattctctatttctctgctcttttgatggttccatgaatttcaaggaggctcta 213  Q
     ||||||||||| ||| |||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||| | ||||||||| ||| ||    
T  12632386 tttttgtaatttgattcgtaaatgagctttgcattcacactttgaggattgtctatttctctgctcttttgatggttccattattttcaaggatgcttta 12632485  T
Q  214 ccttcacgatgacnnnnnnnntcacgcctgctcataaccccattcttgtttgtgaatctaccnnnnnnnattgagaacccttgttgataagcatatctct 313  Q
    |||||||||||||        ||||| ||||  |||||||||||||| |||  |||||||||       |||||||||||||||||||||||||||||||    
T  12632486 ccttcacgatgacaaaaaatatcacgtctgcaaataaccccattcttttttacgaatctaccttttttaattgagaacccttgttgataagcatatctct 12632585  T
Q  314 tataaaagacaaatgcttcttcttcactaagaaaaatttgaccaacaaagggaacacaatttgtctca 381  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12632586 tataaaagacataggcttcttcttcactaagaaaaatttgaccaacaaatggaacacaatttgtctca 12632653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 381
Target Start/End: Original strand, 27107993 - 27108360
Alignment:
Q  14 aagccggtaaaaaacgcacctatgattggtttagcaaaccatggttatgttcaacatcaaaggttgtacctcaccactcaattggaaatatatcatgaca 113  Q
    ||||||||||||||||||||| || |||| |||||||||||||||| ||||| |||  ||| | |||  ||| ||||||| ||||||| ||||||||| |    
T  27107993 aagccggtaaaaaacgcacctctgtttgggttagcaaaccatggttgtgttcgacaataaacgatgtgactcgccactcagttggaaacatatcatgaga 27108092  T
Q  114 cttttgtaatttaattagtaaatgagctttgcaatcacactttgacgattctctatttctctgctcttttgatggttccatgaatttcaaggaggctcta 213  Q
     ||||||||||| ||| |||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||| | ||||||||| ||| ||    
T  27108093 tttttgtaatttgattcgtaaatgagctttgcattcacactttgaggattgtctatttctctgctcttttgatggttccattattttcaaggatgcttta 27108192  T
Q  214 ccttcacgatgacnnnnnnnntcacgcctgctcataaccccattcttgtttgtgaatctaccnnnnnnnattgagaacccttgttgataagcatatctct 313  Q
    |||||||||||||        ||||| ||||  |||||||||||||| |||  |||||||||       |||||||||||||||||||||||||||||||    
T  27108193 ccttcacgatgacaaaaaatatcacgtctgcaaataaccccattcttttttacgaatctaccttttttaattgagaacccttgttgataagcatatctct 27108292  T
Q  314 tataaaagacaaatgcttcttcttcactaagaaaaatttgaccaacaaagggaacacaatttgtctca 381  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  27108293 tataaaagacataggcttcttcttcactaagaaaaatttgaccaacaaatggaacacaatttgtctca 27108360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 381
Target Start/End: Original strand, 44680606 - 44680973
Alignment:
Q  14 aagccggtaaaaaacgcacctatgattggtttagcaaaccatggttatgttcaacatcaaaggttgtacctcaccactcaattggaaatatatcatgaca 113  Q
    ||||||||||||||||||||| || |||| |||||||||||||||| ||||  |||  ||| | |||  ||| ||||||| ||||||||||||||||| |    
T  44680606 aagccggtaaaaaacgcacctctgtttgggttagcaaaccatggttgtgtttgacaataaacgatgtgactcgccactcagttggaaatatatcatgaga 44680705  T
Q  114 cttttgtaatttaattagtaaatgagctttgcaatcacactttgacgattctctatttctctgctcttttgatggttccatgaatttcaaggaggctcta 213  Q
     ||||||||||| ||| |||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||| | ||||||||| ||| ||    
T  44680706 tttttgtaatttgattcgtaaatgagctttgcattcacactttgaggattgtctatttctctgctcttttgatggttccattattttcaaggatgcttta 44680805  T
Q  214 ccttcacgatgacnnnnnnnntcacgcctgctcataaccccattcttgtttgtgaatctaccnnnnnnnattgagaacccttgttgataagcatatctct 313  Q
    |||||||||||||        ||||| ||||  |||||||||||||| |||  |||||||||       |||||||||||||||||||||||||||||||    
T  44680806 ccttcacgatgacaaaaaatatcacgtctgcaaataaccccattcttttttacgaatctaccttttttaattgagaacccttgttgataagcatatctct 44680905  T
Q  314 tataaaagacaaatgcttcttcttcactaagaaaaatttgaccaacaaagggaacacaatttgtctca 381  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  44680906 tataaaagacataggcttcttcttcactaagaaaaatttgaccaacaaatggaacacaatttgtctca 44680973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 39 - 381
Target Start/End: Original strand, 23271873 - 23272215
Alignment:
Q  39 ttggtttagcaaaccatggttatgttcaacatcaaaggttgtacctcaccactcaattggaaatatatcatgacacttttgtaatttaattagtaaatga 138  Q
    |||| |||||||||||||||||||||| |||  ||| | |||  ||| ||||||| ||||||| ||||||||| | ||||||||||| ||| ||||||||    
T  23271873 ttgggttagcaaaccatggttatgttcgacaataaacgatgtgactcgccactcagttggaaacatatcatgagatttttgtaatttgattcgtaaatga 23271972  T
Q  139 gctttgcaatcacactttgacgattctctatttctctgctcttttgatggttccatgaatttcaaggaggctctaccttcacgatgacnnnnnnnntcac 238  Q
    |||||||| | |||||||||| ||| |||||||||||||||||||||||||||||| | | ||||||| ||| |||||||||||||||        ||||    
T  23271973 gctttgcatttacactttgacaattgtctatttctctgctcttttgatggttccattattgtcaaggatgctttaccttcacgatgacaaaaaatatcac 23272072  T
Q  239 gcctgctcataaccccattcttgtttgtgaatctaccnnnnnnnattgagaacccttgttgataagcatatctcttataaaagacaaatgcttcttcttc 338  Q
    | ||||  |||||||||||||| |||  |||||||||       |||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  23272073 gtctgcaaataaccccattcttttttacgaatctaccttttttaattgagaacccttgttgataagcatatctcttataaaagacataagcttcttcttc 23272172  T
Q  339 actaagaaaaatttgaccaacaaagggaacacaatttgtctca 381  Q
    ||||||||||||||||| |||||| ||||||||||||||||||    
T  23272173 actaagaaaaatttgacaaacaaatggaacacaatttgtctca 23272215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 242 - 379
Target Start/End: Original strand, 4709008 - 4709145
Alignment:
Q  242 tgctcataaccccattcttgtttgtgaatctaccnnnnnnnattgagaacccttgttgataagcatatctcttataaaagacaaatgcttcttcttcact 341  Q
    |||| |||||||||||||| |||  |||||||||       ||||| ||  |||| ||||||||||||||||||||||||||| || |||||||||||||    
T  4709008 tgctaataaccccattcttttttacgaatctacctttttttattgacaattcttgctgataagcatatctcttataaaagacatatccttcttcttcact 4709107  T
Q  342 aagaaaaatttgaccaacaaagggaacacaatttgtct 379  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  4709108 aagaaaaatttgaccaacaaaggaaacaaaatttgtct 4709145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 283 - 384
Target Start/End: Complemental strand, 4708873 - 4708773
Alignment:
Q  283 attgagaacccttgttgataagcatatctcttataaaagacaaatgcttcttcttcactaagaaaaatttgaccaacaaagggaacacaatttgtctcat 382  Q
    |||||||||||||||||||||||||||||||||||||| | | ||||||||| |||||||| ||||||| ||||||||||| ||||| ||||||||||||    
T  4708873 attgagaacccttgttgataagcatatctcttataaaa-agacatgcttctttttcactaaaaaaaattcgaccaacaaagagaacataatttgtctcat 4708775  T
Q  383 ta 384  Q
    ||    
T  4708774 ta 4708773  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 284 - 346
Target Start/End: Original strand, 39789350 - 39789412
Alignment:
Q  284 ttgagaacccttgttgataagcatatctcttataaaagacaaatgcttcttcttcactaagaa 346  Q
    |||||||||| |||||||| |||||| |||||||||||| |||| ||||||||||||||||||    
T  39789350 ttgagaacccgtgttgatatgcatatatcttataaaagataaattcttcttcttcactaagaa 39789412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 224
Target Start/End: Original strand, 39789103 - 39789286
Alignment:
Q  41 ggtttagcaaaccatggttatgttcaacatcaaaggttgtacctcaccactcaattggaaatatatcatgacacttttgtaatttaattagtaaatgagc 140  Q
    |||||||||||||||||||||||||| || ||||  ||||| ||| ||||||| ||  |||| |||||    ||| ||||||    ||| ||||||||||    
T  39789103 ggtttagcaaaccatggttatgttcatcaacaaactttgtaactcgccactcacttaaaaatgtatcacaggactattgtaacgagattcgtaaatgagc 39789202  T
Q  141 tttgcaatcacactttgacgattctctatttctctgctcttttgatggttccatgaatttcaaggaggctctaccttcacgatg 224  Q
    ||| || ||  ||| ||| |||||||| ||||| || ||||||||||||||  ||| |||  ||||| || |||||||| ||||    
T  39789203 tttacattcgtactatgatgattctctttttctttgttcttttgatggttcgttgatttttcaggagactttaccttcatgatg 39789286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 369
Target Start/End: Complemental strand, 13510187 - 13510120
Alignment:
Q  304 gcatatctcttataaaagacaaatgcttcttcttcactaagaaaa--atttgaccaacaaagggaaca 369  Q
    |||||||||||||| |||||||||| |||||| |  |||||||||  |||||||||||||| ||||||    
T  13510187 gcatatctcttatagaagacaaatgtttcttccttgctaagaaaaatatttgaccaacaaaaggaaca 13510120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 380
Target Start/End: Original strand, 18616199 - 18616254
Alignment:
Q  325 aatgcttcttcttcactaagaaaaatttgaccaacaaagggaacacaatttgtctc 380  Q
    |||||||||| |||| ||||||||||||||||| ||||   |||||||||||||||    
T  18616199 aatgcttctttttcattaagaaaaatttgaccagcaaaaaaaacacaatttgtctc 18616254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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