View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10702_low_8 (Length: 413)

Name: NF10702_low_8
Description: NF10702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10702_low_8
NF10702_low_8
[»] chr3 (2 HSPs)
chr3 (11-406)||(29208009-29208408)
chr3 (224-316)||(55469937-55470029)
[»] chr5 (4 HSPs)
chr5 (232-309)||(39647243-39647320)
chr5 (263-312)||(39647139-39647188)
chr5 (264-322)||(8928401-8928459)
chr5 (248-314)||(11257713-11257779)
[»] chr7 (4 HSPs)
chr7 (250-311)||(2219538-2219599)
chr7 (237-322)||(23117361-23117446)
chr7 (248-332)||(24672266-24672350)
chr7 (263-314)||(23218630-23218681)
[»] chr1 (2 HSPs)
chr1 (249-314)||(33651641-33651706)
chr1 (263-314)||(6025980-6026031)
[»] chr6 (2 HSPs)
chr6 (263-314)||(2732936-2732987)
chr6 (248-286)||(17333528-17333566)
[»] chr4 (1 HSPs)
chr4 (263-309)||(13298529-13298575)
[»] chr2 (1 HSPs)
chr2 (249-293)||(6626750-6626794)


Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 11 - 406
Target Start/End: Original strand, 29208009 - 29208408
Alignment:
Q  11 caaaggttgtatcactatctag----tgaagtatgcaagctgttttgttgcttaagaaacacctcccattcatctcatttcatttactatcattaaggat 106  Q
    ||||||||||||||||||||||    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29208009 caaaggttgtatcactatctagctagtgaagtatgcaagatgttttgttgcttaagaaacacctcccattcatctcatttcatttactatcattaaggat 29208108  T
Q  107 gctacttttgacaattccataacttcaatcttaagatgaaccatgaaatagaacaaaacaagtgcatgagaatcatcttcaatgacttctctttgtctaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||    
T  29208109 gctacttttgacaattccataacttcaatcttaagatgaaccatgaaatagaacaaaacaagtgcatgagaatcatctttattgacttctctttgtccaa 29208208  T
Q  207 caacattgtaaaatagcgttgttaaatagtggtgctataacgctatagtgtaacataatttgaacaaatcgttattgttctatgatatgctgtttagtac 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| | |||| ||||||||||||    
T  29208209 caacattgtaaaatagcgttgttaaatagtggtgctataacgctatagtgtaatagaatttgaacaaatcgttattgttccacgatacgctgtttagtac 29208308  T
Q  307 aaaatgttttgaaatattggatacaatgacgctatatatagcaccgttgcgtagctgagtttgaacaaaaactattttttgcaattagaaattatgttag 406  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  29208309 aaaatgttttgaaatagtggatacaatgacgctatatatagcactgttgcgtagctgagtttgaacaaaaactattttttgcaattagcaattatgttag 29208408  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 224 - 316
Target Start/End: Complemental strand, 55470029 - 55469937
Alignment:
Q  224 gttgttaaatagtggtgctataacgctatagtgtaacataatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatgtttt 316  Q
    ||||||||||||||| |||||| |||||||||||| |  ||||| |||||| || ||||||||  || |||||||| ||||||||||| ||||    
T  55470029 gttgttaaatagtggcgctataccgctatagtgtagcggaatttaaacaaaccgctattgttccgtggtatgctgtgtagtacaaaatatttt 55469937  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 232 - 309
Target Start/End: Complemental strand, 39647320 - 39647243
Alignment:
Q  232 atagtggtgctataacgctatagtgtaacataatttgaacaaatcgttattgttctatgatatgctgtttagtacaaa 309  Q
    |||||||||||||||||||||| ||||    |||||||| ||||||||||||||||  |||||||||||||| |||||    
T  39647320 atagtggtgctataacgctatactgtagtggaatttgaataaatcgttattgttctgcgatatgctgtttagcacaaa 39647243  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 39647188 - 39647139
Alignment:
Q  263 aatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatg 312  Q
    |||||||||||||||||||||||||  |||||||| ||||||||||||||    
T  39647188 aatttgaacaaatcgttattgttctgcgatatgctatttagtacaaaatg 39647139  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 322
Target Start/End: Complemental strand, 8928459 - 8928401
Alignment:
Q  264 atttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatgttttgaaata 322  Q
    |||||||||||||| |||||||| |||||| ||| ||||||||||||| || |||||||    
T  8928459 atttgaacaaatcgctattgttcgatgatacgctatttagtacaaaatattctgaaata 8928401  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 314
Target Start/End: Original strand, 11257713 - 11257779
Alignment:
Q  248 gctatagtgtaacataatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatgtt 314  Q
    ||||||||||| |  ||| ||||||||||| ||||||| || |||||||| ||||||||||||||||    
T  11257713 gctatagtgtagcggaatatgaacaaatcgctattgttatacgatatgctatttagtacaaaatgtt 11257779  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 311
Target Start/End: Complemental strand, 2219599 - 2219538
Alignment:
Q  250 tatagtgtaacataatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaat 311  Q
    |||||||||  | |||||||||| |||||||||||||| ||||||||| |||||||||||||    
T  2219599 tatagtgtagtagaatttgaacatatcgttattgttctctgatatgctatttagtacaaaat 2219538  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 322
Target Start/End: Complemental strand, 23117446 - 23117361
Alignment:
Q  237 ggtgctataacgctatagtgtaacataatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatgttttgaaata 322  Q
    |||| ||||||||||| |  || || ||||||||||||||| |||| ||| |||||||||| ||||| |||||||||| |||||||    
T  23117446 ggtgttataacgctattgaatagcagaatttgaacaaatcgctatttttccatgatatgctatttagcacaaaatgttgtgaaata 23117361  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 332
Target Start/End: Complemental strand, 24672350 - 24672266
Alignment:
Q  248 gctatagtgtaacataatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatgttttgaaatattggatacaa 332  Q
    |||||||  |||||||||||| |||||| ||||||||||||  ||| ||| ||||||||| ||| |||| ||||| ||| |||||    
T  24672350 gctatagcataacataatttgcacaaatagttattgttctacaatacgctatttagtacataatattttcaaatagtggctacaa 24672266  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 263 - 314
Target Start/End: Complemental strand, 23218681 - 23218630
Alignment:
Q  263 aatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatgtt 314  Q
    |||||| ||||||||| |||||||||||||| ||| |||| |||||||||||    
T  23218681 aatttggacaaatcgtcattgttctatgatacgctatttaatacaaaatgtt 23218630  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 249 - 314
Target Start/End: Original strand, 33651641 - 33651706
Alignment:
Q  249 ctatagtgtaacataatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatgtt 314  Q
    |||||||||| ||  ||| |||||||||||||||||||||  ||||||| ||||||| ||||||||    
T  33651641 ctatagtgtagcagtattcgaacaaatcgttattgttctacaatatgctatttagtataaaatgtt 33651706  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 263 - 314
Target Start/End: Complemental strand, 6026031 - 6025980
Alignment:
Q  263 aatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatgtt 314  Q
    ||||||||||||| ||||||||||   |||||||| ||||||||||||||||    
T  6026031 aatttgaacaaatagttattgttccgcgatatgctatttagtacaaaatgtt 6025980  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 263 - 314
Target Start/End: Original strand, 2732936 - 2732987
Alignment:
Q  263 aatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatgtt 314  Q
    ||||||||||||||| ||||||| |  |||||||| ||||||||||||||||    
T  2732936 aatttgaacaaatcgctattgttttgcgatatgctatttagtacaaaatgtt 2732987  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 286
Target Start/End: Complemental strand, 17333566 - 17333528
Alignment:
Q  248 gctatagtgtaacataatttgaacaaatcgttattgttc 286  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  17333566 gctatagtgtagcgtaatttgaacaaatcgttattgttc 17333528  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 309
Target Start/End: Original strand, 13298529 - 13298575
Alignment:
Q  263 aatttgaacaaatcgttattgttctatgatatgctgtttagtacaaa 309  Q
    ||||||||||||||  ||||||||| ||||||||| |||||||||||    
T  13298529 aatttgaacaaatcactattgttctgtgatatgctatttagtacaaa 13298575  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 293
Target Start/End: Complemental strand, 6626794 - 6626750
Alignment:
Q  249 ctatagtgtaacataatttgaacaaatcgttattgttctatgata 293  Q
    |||||| |||||| ||||||||||||||| |||||||| ||||||    
T  6626794 ctatagagtaacaaaatttgaacaaatcgctattgttccatgata 6626750  T

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