View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10703_low_2 (Length: 246)
Name: NF10703_low_2
Description: NF10703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10703_low_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 9 - 246
Target Start/End: Complemental strand, 36691856 - 36691619
Alignment:
| Q |
9 |
agatggacatcacaaaattctatcatgcaacgcaatactttagtaaggacaatgtcattggggtgggagtgactgggataatgtacaaaacaacactttc |
108 |
Q |
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| T |
36691856 |
agatgaacttcacaaaattctatcatgcaacgcaatactttagtaaggacaatgtcattggggtgggagtgactgggataatgtacaaaacaacactttc |
36691757 |
T |
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| Q |
109 |
caacggttgcattttcgtagctaagagactacatgattctcaattgtgtatcaaaagattcgaatcagaaataaagattttgggacaatacagtcataga |
208 |
Q |
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| T |
36691756 |
caacggttgcattttcgcagctaagagactacatgattctcaattgtgtatcaaaagattcgaatcagaaataaagattttgggacaatacagtcataga |
36691657 |
T |
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| Q |
209 |
aacatacttcccttgattggtttctgcatagatgaaga |
246 |
Q |
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| T |
36691656 |
aacatacttcccttgattggtttctgcatagatgaaga |
36691619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 130 - 245
Target Start/End: Complemental strand, 23655416 - 23655301
Alignment:
| Q |
130 |
taagagactacatgattctcaattgtgtatcaaaagattcgaatcagaaataaagattttgggacaatacagtcatagaaacatacttcccttgattggt |
229 |
Q |
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| T |
23655416 |
taagagactatatgattctcaatcaattatcaaaaggtttgagttagaaataatgattttgggacaatacagtcatagaaacatagtttcattgattggt |
23655317 |
T |
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| Q |
230 |
ttctgcatagatgaag |
245 |
Q |
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| T |
23655316 |
tttagcatagaagaag |
23655301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 130 - 245
Target Start/End: Original strand, 23803154 - 23803269
Alignment:
| Q |
130 |
taagagactacatgattctcaattgtgtatcaaaagattcgaatcagaaataaagattttgggacaatacagtcatagaaacatacttcccttgattggt |
229 |
Q |
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|||||||||| |||||||||||| ||||||||| || || | |||||||| ||||||||||||||||||||||||||||||| || | ||||||||| |
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| T |
23803154 |
taagagactatatgattctcaatcaattatcaaaaggtttgagttagaaataatgattttgggacaatacagtcatagaaacatagtttcattgattggt |
23803253 |
T |
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| Q |
230 |
ttctgcatagatgaag |
245 |
Q |
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| T |
23803254 |
tttagcatagaagaag |
23803269 |
T |
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