View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10703_low_3 (Length: 238)
Name: NF10703_low_3
Description: NF10703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10703_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 44000427 - 44000224
Alignment:
| Q |
18 |
ggtttgtgaagatattttctatattaattcatttcctaaaatttgtgttagttttaatttttaacaatgagaaaggagattctcttaaagtaaatatttg |
117 |
Q |
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| T |
44000427 |
ggtttgtgaagatattttcaatatt----catttcctaaaattagtgttagttttaatttttaacaatgagaaaggagattctcttaaagtaaacatttg |
44000332 |
T |
|
| Q |
118 |
tcttgcattatttatcacaagagctattttatcaatttcctgaaatgtctaactaggattttatcttgtttccatggaaatgactcataagtatttcgtg |
217 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44000331 |
tcttgcattatttatcacaagagctattttctcaatttcctgaaatgtctaactaggattttatcttgtttccatggaaatgactcataagtatttcgtg |
44000232 |
T |
|
| Q |
218 |
tttcatct |
225 |
Q |
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|||||||| |
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| T |
44000231 |
tttcatct |
44000224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 3719132 - 3719183
Alignment:
| Q |
45 |
ttcatttcctaaaatttgtgttagttttaatttttaacaatgagaaaggaga |
96 |
Q |
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| T |
3719132 |
ttcatttcctaaaatttgtgttagttttacttattaacaaggaaaaaggaga |
3719183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 27803104 - 27803053
Alignment:
| Q |
45 |
ttcatttcctaaaatttgtgttagttttaatttttaacaatgagaaaggaga |
96 |
Q |
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| T |
27803104 |
ttcatttcctaaaacttgtgttagttttacttgttaacaaggagaaaagaga |
27803053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 9164010 - 9164063
Alignment:
| Q |
45 |
ttcatttcctaaaatttgtgttagttttaatttttaacaatgagaaaggagatt |
98 |
Q |
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|||| |||||||||||||||||||||||| || ||||||| |||||| |||||| |
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| T |
9164010 |
ttcacttcctaaaatttgtgttagttttacttattaacaaggagaaaagagatt |
9164063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 84
Target Start/End: Original strand, 24985422 - 24985461
Alignment:
| Q |
45 |
ttcatttcctaaaatttgtgttagttttaatttttaacaa |
84 |
Q |
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| T |
24985422 |
ttcatttcctaaaatttgtattagttttactttttaacaa |
24985461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 11229107 - 11229153
Alignment:
| Q |
45 |
ttcatttcctaaaatttgtgttagttttaatttttaacaatgagaaa |
91 |
Q |
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||||||||||||||||||||||||||||| || || |||| |||||| |
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| T |
11229107 |
ttcatttcctaaaatttgtgttagttttatttgtttacaaggagaaa |
11229153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 50084773 - 50084821
Alignment:
| Q |
48 |
atttcctaaaatttgtgttagttttaatttttaacaatgagaaaggaga |
96 |
Q |
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|||||||||||||||| ||| ||||| || ||||||| ||||||||||| |
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| T |
50084773 |
atttcctaaaatttgtattaattttacttgttaacaaggagaaaggaga |
50084821 |
T |
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