View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10704_1 (Length: 438)
Name: NF10704_1
Description: NF10704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10704_1 |
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Alignment Details
Target: chr5 (Bit Score: 145; Significance: 4e-76; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 270 - 421
Target Start/End: Complemental strand, 3429837 - 3429685
Alignment:
| Q |
270 |
acacatcgattggggg-ttttgcttggttccacgtggagtttgatagatttctttcatttaaggcaatggatattagagattgcgtgaaacagaaaaaga |
368 |
Q |
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| T |
3429837 |
acacatcgattggggggttttgcttggttccacgtggagtttgatagatttctttcatttaaggcaatggatattagagattgcgtgaaacagaaaaaga |
3429738 |
T |
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| Q |
369 |
aaaagatgtttggtataaattaactgactttgtttcatgaatgatgatgatgt |
421 |
Q |
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| T |
3429737 |
aaaagatgtttggtataaattaactgactttgtttcatgaatgatgatgatgt |
3429685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 3430086 - 3429895
Alignment:
| Q |
1 |
ctaattcatgttatcatcattgttaatttattattattacttttttcaactaattcatacatatgtctagtagtttgagatcaatattgagtcttacaaa |
100 |
Q |
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| T |
3430086 |
ctaattcatgctatcatcattgttaatttattattattacttttttcaactaattcatgcatatgtctagtagtttgagatcaatattgagtcttagaaa |
3429987 |
T |
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| Q |
101 |
ttgtttcgacttgtggcgtgagaattatcttcacctataaacatttgttcagataatctcttatccgaatcacagactctctaacattgagtttcttaat |
200 |
Q |
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| T |
3429986 |
ttgtttccacttgtgacgtgagaattatcttcacctataaacgt----------------ttatccgaatcagagactctctaacattgagtttcttaat |
3429903 |
T |
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