View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10704_3 (Length: 405)

Name: NF10704_3
Description: NF10704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10704_3
NF10704_3
[»] chr3 (2 HSPs)
chr3 (85-405)||(55071043-55071368)
chr3 (6-48)||(55071403-55071445)
[»] chr7 (2 HSPs)
chr7 (85-154)||(43393006-43393075)
chr7 (85-155)||(7415034-7415104)
[»] chr5 (1 HSPs)
chr5 (85-153)||(18600295-18600363)
[»] chr2 (3 HSPs)
chr2 (85-153)||(34546698-34546765)
chr2 (85-153)||(26294576-26294645)
chr2 (111-152)||(26178803-26178844)
[»] chr8 (3 HSPs)
chr8 (95-154)||(3608456-3608515)
chr8 (85-154)||(18340414-18340483)
chr8 (85-129)||(16947402-16947446)
[»] chr4 (3 HSPs)
chr4 (85-153)||(468678-468746)
chr4 (85-152)||(153331-153398)
chr4 (93-153)||(11870877-11870937)
[»] chr6 (1 HSPs)
chr6 (85-153)||(33630686-33630754)


Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 85 - 405
Target Start/End: Complemental strand, 55071368 - 55071043
Alignment:
Q  85 attctctccatttatgtttgtgtgcccaaatattttttatttgggtttgagtttaggtaagaattgctccacatttgatatattgtccatgtgtctttaa 184  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  55071368 attctctccatttatgtt-gtgtgcccaaatattttttatttgggtttgtgtttagctaagaattgctccacatttgatatattgtctatgtgtctttaa 55071270  T
Q  185 atatttgtgatcaagcaagtatttttcgattgatatatc--gtatcatagagtgt----ttgtgaattttgtttaggttgggttcctttttaccgtggaa 278  Q
    |||||||||||||||||||||||||||||||||||||||  |||| |||||||||    |||| ||||||||||||||||||||||||||||||||||||    
T  55071269 atatttgtgatcaagcaagtatttttcgattgatatatcgtgtattatagagtgtttgcttgtaaattttgtttaggttgggttcctttttaccgtggaa 55071170  T
Q  279 acagatgctaataatagtagctttgactagtttattttttcttccttcatctcactcgaccannnnnnnaatagagtacatcttacatgtttatgtagcc 378  Q
    ||||||||||||||||||||||||||||||||| |||||| || ||||| |  | |||| ||       |||||||||||||||||||||||||||||||    
T  55071169 acagatgctaataatagtagctttgactagttttttttttttttcttcaacgaagtcgatcatttttttaatagagtacatcttacatgtttatgtagcc 55071070  T
Q  379 aattatgttgagtcggtatgcatccgg 405  Q
    |||||||||||||||||||||||||||    
T  55071069 aattatgttgagtcggtatgcatccgg 55071043  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 48
Target Start/End: Complemental strand, 55071445 - 55071403
Alignment:
Q  6 ttaagcacctacaaatacataagacatatttaaaggtaaaagt 48  Q
    |||||||| ||||||||||||||||| ||||||||||||||||    
T  55071445 ttaagcacatacaaatacataagacagatttaaaggtaaaagt 55071403  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 85 - 154
Target Start/End: Original strand, 43393006 - 43393075
Alignment:
Q  85 attctctccatttatgtttgtgtgcccaaatattttttatttgggtttgagtttaggtaagaattgctcc 154  Q
    ||||||| ||||| ||| ||||||||||||||||||||||||||||||  || |||||||||||||||||    
T  43393006 attctcttcatttgtgtatgtgtgcccaaatattttttatttgggtttatgtctaggtaagaattgctcc 43393075  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 85 - 155
Target Start/End: Original strand, 7415034 - 7415104
Alignment:
Q  85 attctctccatttatgtttgtgtgcccaaatattttttatttgggtttgagtttaggtaagaattgctcca 155  Q
    ||||||||||||||||  |||||||||||||||| ||||||| |||||  | || ||||||||||||||||    
T  7415034 attctctccatttatgaatgtgtgcccaaatattatttatttcggtttatgattgggtaagaattgctcca 7415104  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 85 - 153
Target Start/End: Complemental strand, 18600363 - 18600295
Alignment:
Q  85 attctctccatttatgtttgtgtgcccaaatattttttatttgggtttgagtttaggtaagaattgctc 153  Q
    ||||||||||||||||| ||||| ||||||||||||| ||||||||||| |  || |||||||||||||    
T  18600363 attctctccatttatgtatgtgtacccaaatatttttgatttgggtttgtgactaagtaagaattgctc 18600295  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 85 - 153
Target Start/End: Original strand, 34546698 - 34546765
Alignment:
Q  85 attctctccatttatgtttgtgtgcccaaatattttttatttgggtttgagtttaggtaagaattgctc 153  Q
    ||||||||||||||||||| |||| ||||||| ||||||||| | |||| |||||||||||||||||||    
T  34546698 attctctccatttatgtttatgtgtccaaata-tttttatttagatttgtgtttaggtaagaattgctc 34546765  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 85 - 153
Target Start/End: Complemental strand, 26294645 - 26294576
Alignment:
Q  85 attctctccatttatgtttgtgtgcccaaatatttttt-atttgggtttgagtttaggtaagaattgctc 153  Q
    ||||||||  ||||||| |||||| ||||||||||||| ||||||||||  || ||||||||||||||||    
T  26294645 attctctcattttatgtatgtgtgtccaaatatttttttatttgggtttctgtctaggtaagaattgctc 26294576  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 152
Target Start/End: Original strand, 26178803 - 26178844
Alignment:
Q  111 caaatattttttatttgggtttgagtttaggtaagaattgct 152  Q
    ||||||||||||||||||||||  || |||||||||||||||    
T  26178803 caaatattttttatttgggtttatgtctaggtaagaattgct 26178844  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 95 - 154
Target Start/End: Complemental strand, 3608515 - 3608456
Alignment:
Q  95 tttatgtttgtgtgcccaaatattttttatttgggtttgagtttaggtaagaattgctcc 154  Q
    ||||||| |||||| ||||||||||||||| |||||||| || |||||||||||||||||    
T  3608515 tttatgtatgtgtgtccaaatattttttatctgggtttgtgtctaggtaagaattgctcc 3608456  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 154
Target Start/End: Complemental strand, 18340483 - 18340414
Alignment:
Q  85 attctctccatttatgtttgtgtgcccaaatattttttatttgggtttgagtttaggtaagaattgctcc 154  Q
    ||||||||||||||||| ||||||  ||||||||||| |||| |||||| |  |||||||||||||||||    
T  18340483 attctctccatttatgtatgtgtgttcaaatatttttaatttaggtttgtgactaggtaagaattgctcc 18340414  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 85 - 129
Target Start/End: Original strand, 16947402 - 16947446
Alignment:
Q  85 attctctccatttatgtttgtgtgcccaaatattttttatttggg 129  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||    
T  16947402 attctctccatttatgtatgtgtgtccaaatattttttatttggg 16947446  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 85 - 153
Target Start/End: Original strand, 468678 - 468746
Alignment:
Q  85 attctctccatttatgtttgtgtgcccaaatattttttatttgggtttgagtttaggtaagaattgctc 153  Q
    |||||||| |||||||| ||| ||||||||||||||| ||||||| ||| |  ||||||||||||||||    
T  468678 attctctctatttatgtatgtatgcccaaatatttttgatttgggattgtgactaggtaagaattgctc 468746  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 153331 - 153398
Alignment:
Q  85 attctctccatttatgtttgtgtgcccaaatattttttatttgggtttgagtttaggtaagaattgct 152  Q
    ||||| ||||||||| | ||||||||||||||||||| ||||||| ||| |  |||||||||||||||    
T  153331 attctatccatttatctatgtgtgcccaaatatttttgatttggggttgtgactaggtaagaattgct 153398  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 153
Target Start/End: Complemental strand, 11870937 - 11870877
Alignment:
Q  93 catttatgtttgtgtgcccaaatattttttatttgggtttgagtttaggtaagaattgctc 153  Q
    ||||||||| ||||||   ||||||||||||||||| |||| ||| |||||||||||||||    
T  11870937 catttatgtatgtgtgtttaaatattttttatttggatttgtgttcaggtaagaattgctc 11870877  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 153
Target Start/End: Complemental strand, 33630754 - 33630686
Alignment:
Q  85 attctctccatttatgtttgtgtgcccaaatattttttatttgggtttgagtttaggtaagaattgctc 153  Q
    ||||||||||||||||| |||||  || |||||||||||||| ||||||   ||| |||||||||||||    
T  33630754 attctctccatttatgtatgtgtagcctaatattttttatttaggtttgtaattaagtaagaattgctc 33630686  T

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