View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10704_5 (Length: 382)
Name: NF10704_5
Description: NF10704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10704_5 |
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| [»] scaffold0056 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 33 - 199
Target Start/End: Complemental strand, 21211182 - 21211016
Alignment:
| Q |
33 |
ggcagattgaagaagtcttgaacaagttttttaaaattttccaccaataaaggattgactccgtgattgatcaactgccaataatttcacaatcatggtt |
132 |
Q |
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| T |
21211182 |
ggcagattgaagaagtcttgaacaagttttttaaaattttccaccaataaaggattgactccgtgattgatcaactgccaataatttcacaatcatggtt |
21211083 |
T |
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| Q |
133 |
tgtgttatgggacaactaacactcccaaattacaataaaaccataattatgtaacattgagattgtg |
199 |
Q |
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| T |
21211082 |
tgtgttatgggacaactaacactcccaaattacaataaaaccataattatgtaacattgagattgtg |
21211016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 297 - 361
Target Start/End: Complemental strand, 21210703 - 21210641
Alignment:
| Q |
297 |
gcagtttagtgttgatattccgagagcaatgcatatgtatttatataaatgaccaactgatgatg |
361 |
Q |
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| T |
21210703 |
gcagtttagtgttgatattccgagagcgatgcatatgtatt--tataaatgaccaactaatgatg |
21210641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 23022966 - 23023007
Alignment:
| Q |
68 |
attttccaccaataaaggattgactccgtgattgatcaactg |
109 |
Q |
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| T |
23022966 |
attttccaccaataaaggatcgactccgtgattaatcaactg |
23023007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 22927945 - 22927904
Alignment:
| Q |
68 |
attttccaccaataaaggattgactccgtgattgatcaactg |
109 |
Q |
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| T |
22927945 |
attttccaccaataaatgatcgactccgtgattaatcaactg |
22927904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 121; Significance: 7e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 30 - 178
Target Start/End: Original strand, 26915032 - 26915180
Alignment:
| Q |
30 |
actggcagattgaagaagtcttgaacaagttttttaaaattttccaccaataaaggattgactccgtgattgatcaactgccaataatttcacaatcatg |
129 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
26915032 |
actggcagattgaagaagtcttggacaagttttttaaaattttccaccaataaaggattgactccgtgattgatcaactgccaataatttgaaaatcatg |
26915131 |
T |
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| Q |
130 |
gtttgtgttatgggacaactaacactcccaaattacaataaaaccataa |
178 |
Q |
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| T |
26915132 |
gttcatgttacgggacaactaacactaccaaattacaataaaaccataa |
26915180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0056 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0056
Description:
Target: scaffold0056; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 63371 - 63440
Alignment:
| Q |
36 |
agattgaagaagtcttgaacaagttttttaaaattttccaccaataaaggattgactccgtgattgatca |
105 |
Q |
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| T |
63371 |
agattgaagaactcttgaacatgttttttgaaattttcaaccaatgatagatcgactccatgattgatca |
63440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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