View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10704_6 (Length: 367)

Name: NF10704_6
Description: NF10704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10704_6
NF10704_6
[»] chr6 (2 HSPs)
chr6 (1-361)||(9538681-9539040)
chr6 (275-325)||(2445291-2445341)
[»] chr5 (3 HSPs)
chr5 (259-325)||(38756722-38756788)
chr5 (258-306)||(30488936-30488984)
chr5 (279-315)||(42608888-42608924)
[»] chr7 (3 HSPs)
chr7 (257-324)||(29726793-29726860)
chr7 (285-314)||(26980965-26980994)
chr7 (254-314)||(5458069-5458129)
[»] chr8 (2 HSPs)
chr8 (257-311)||(13284266-13284320)
chr8 (257-314)||(40167325-40167382)
[»] chr2 (1 HSPs)
chr2 (257-315)||(9547410-9547468)
[»] chr1 (6 HSPs)
chr1 (279-325)||(4896633-4896679)
chr1 (280-314)||(15382843-15382877)
chr1 (280-313)||(5553025-5553058)
chr1 (257-314)||(10841903-10841960)
chr1 (254-314)||(3777721-3777781)
chr1 (288-324)||(41032924-41032960)
[»] scaffold0008 (1 HSPs)
scaffold0008 (278-327)||(119559-119608)


Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 9538681 - 9539040
Alignment:
Q  1 gaaaaaatgtatgagagttgagtaaagagtaatgaagaagtggttaaatgctttgataaaggaacttagttgaagagtgaatataatgggactaaatttt 100  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  9538681 gaaaaaatatatgagagttgagtaaagagtcatgaagaagtggttaaatgctttgataaagggacttagttgaagagtgaatataatggtactaaatttt 9538780  T
Q  101 ttgaagtgtgtggtttacttaatttttggattcttttcttttataacaaggcctctccatgtgtcaatca-ttttttgataagggaaatttgtagattct 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| | ||||||||    
T  9538781 ttgaagtgtgtggtttacttaatttttggattcttttcttttataacaaggcctctccatgtgtcaataatttttttgataagggaaatatttagattct 9538880  T
Q  200 gtcgtagtagctacaaggagaactatcacatgtatcannnnnnnnnatgatgaccgaggtttgaatcccaaaccgtgtaaatatgatacattgttcatat 299  Q
    || |||||||||| |||||||||||||||||||| ||          |||||||||||||||||| |||| ||| | |||||||||||||||||| |||     
T  9538881 gtggtagtagctataaggagaactatcacatgtaccattttttag--tgatgaccgaggtttgaaccccagaccttataaatatgatacattgtttatac 9538978  T
Q  300 caactgagttaagctttcgaggacatcacatgcatcagcttatagttgcagattcatctcac 361  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  9538979 caactgagttaagctttcgaggacatcacatgcatcagtttatagttgcagattcttctcac 9539040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 325
Target Start/End: Complemental strand, 2445341 - 2445291
Alignment:
Q  275 tgtaaatatgatacattgttcatatcaactgagttaagctttcgaggacat 325  Q
    |||| |||| || |||||||||||||||||||||||||||| |||||||||    
T  2445341 tgtatatattatgcattgttcatatcaactgagttaagcttacgaggacat 2445291  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 325
Target Start/End: Complemental strand, 38756788 - 38756722
Alignment:
Q  259 tttgaatcccaaaccgtgtaaatatgatacattgttcatatcaactgagttaagctttcgaggacat 325  Q
    |||||| ||| |||| |||| |||| ||||||| ||||||||||||||||||| ||| |||||||||    
T  38756788 tttgaaccccgaaccttgtatatattatacattattcatatcaactgagttaaacttacgaggacat 38756722  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 306
Target Start/End: Complemental strand, 30488984 - 30488936
Alignment:
Q  258 gtttgaatcccaaaccgtgtaaatatgatacattgttcatatcaactga 306  Q
    ||||||| |||||||| |||| |||| || |||||||||||||||||||    
T  30488984 gtttgaaccccaaaccttgtatatattatgcattgttcatatcaactga 30488936  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 42608888 - 42608924
Alignment:
Q  279 aatatgatacattgttcatatcaactgagttaagctt 315  Q
    ||||| || ||||||||||||||||||||||||||||    
T  42608888 aatattatgcattgttcatatcaactgagttaagctt 42608924  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 324
Target Start/End: Complemental strand, 29726860 - 29726793
Alignment:
Q  257 ggtttgaatcccaaaccgtgtaaatatgatacattgttcatatcaactgagttaagctttcgaggaca 324  Q
    |||||||| ||| |||| || | |||| ||||||||||||| ||||||||||||||||  ||||||||    
T  29726860 ggtttgaaccccgaaccttgcatatattatacattgttcatgtcaactgagttaagctcacgaggaca 29726793  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 314
Target Start/End: Original strand, 26980965 - 26980994
Alignment:
Q  285 atacattgttcatatcaactgagttaagct 314  Q
    ||||||||||||||||||||||||||||||    
T  26980965 atacattgttcatatcaactgagttaagct 26980994  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 314
Target Start/End: Original strand, 5458069 - 5458129
Alignment:
Q  254 cgaggtttgaatcccaaaccgtgtaaatatgatacattgttcatatcaactgagttaagct 314  Q
    |||||||||||||||| ||| || | |||| || |||||||| ||||||||||| ||||||    
T  5458069 cgaggtttgaatcccagaccttgcatatattatgcattgttcttatcaactgagctaagct 5458129  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 311
Target Start/End: Original strand, 13284266 - 13284320
Alignment:
Q  257 ggtttgaatcccaaaccgtgtaaatatgatacattgttcatatcaactgagttaa 311  Q
    |||||||| | |||||| | || |||| |||||||||||||||||||||||||||    
T  13284266 ggtttgaacctcaaaccttatatatattatacattgttcatatcaactgagttaa 13284320  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 314
Target Start/End: Complemental strand, 40167382 - 40167325
Alignment:
Q  257 ggtttgaatcccaaaccgtgtaaatatgatacattgttcatatcaactgagttaagct 314  Q
    |||||||||||| |||| |||| |||| || |||||| |||| |||||||||||||||    
T  40167382 ggtttgaatcccgaaccttgtatatattatgcattgtccataccaactgagttaagct 40167325  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 315
Target Start/End: Original strand, 9547410 - 9547468
Alignment:
Q  257 ggtttgaatcccaaaccgtgtaaatatgatacattgttcatatcaactgagttaagctt 315  Q
    |||||||| |||||||| || | |||| || |||||| |||||||||||||||||||||    
T  9547410 ggtttgaaccccaaaccttgcatatattatgcattgtccatatcaactgagttaagctt 9547468  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 325
Target Start/End: Complemental strand, 4896679 - 4896633
Alignment:
Q  279 aatatgatacattgttcatatcaactgagttaagctttcgaggacat 325  Q
    ||||| ||||||||| ||||||||||||||||||||| ||| |||||    
T  4896679 aatattatacattgtccatatcaactgagttaagcttacgaagacat 4896633  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 314
Target Start/End: Original strand, 15382843 - 15382877
Alignment:
Q  280 atatgatacattgttcatatcaactgagttaagct 314  Q
    |||| ||||||||||||||||||||||||||||||    
T  15382843 atattatacattgttcatatcaactgagttaagct 15382877  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 313
Target Start/End: Original strand, 5553025 - 5553058
Alignment:
Q  280 atatgatacattgttcatatcaactgagttaagc 313  Q
    |||| |||||||||||||||||||||||||||||    
T  5553025 atattatacattgttcatatcaactgagttaagc 5553058  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 314
Target Start/End: Complemental strand, 10841960 - 10841903
Alignment:
Q  257 ggtttgaatcccaaaccgtgtaaatatgatacattgttcatatcaactgagttaagct 314  Q
    |||||||||| |||||| | || |||| || |||||| ||||||||||||||||||||    
T  10841960 ggtttgaatctcaaaccttatatatattatgcattgtccatatcaactgagttaagct 10841903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 314
Target Start/End: Complemental strand, 3777781 - 3777721
Alignment:
Q  254 cgaggtttgaatcccaaaccgtgtaaatatgatacattgttcatatcaactgagttaagct 314  Q
    ||||||||||| | | |||| |||| |||| ||||||| | ||||||||||||||||||||    
T  3777781 cgaggtttgaacctcgaaccttgtatatattatacattatccatatcaactgagttaagct 3777721  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 324
Target Start/End: Complemental strand, 41032960 - 41032924
Alignment:
Q  288 cattgttcatatcaactgagttaagctttcgaggaca 324  Q
    |||||||||||||||||||||||||||  ||||||||    
T  41032960 cattgttcatatcaactgagttaagctcacgaggaca 41032924  T

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Target: scaffold0008 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 327
Target Start/End: Complemental strand, 119608 - 119559
Alignment:
Q  278 aaatatgatacattgttcatatcaactgagttaagctttcgaggacatca 327  Q
    |||||| ||||||||| | ||||||||||||||||||  |||||||||||    
T  119608 aaatattatacattgtccctatcaactgagttaagctcacgaggacatca 119559  T

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