View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10705_low_10 (Length: 241)

Name: NF10705_low_10
Description: NF10705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10705_low_10
NF10705_low_10
[»] chr2 (2 HSPs)
chr2 (19-241)||(33652258-33652480)
chr2 (19-108)||(30922179-30922268)
[»] chr7 (1 HSPs)
chr7 (19-108)||(42922394-42922483)
[»] chr8 (4 HSPs)
chr8 (19-108)||(3753514-3753603)
chr8 (20-107)||(45287511-45287598)
chr8 (19-98)||(19252332-19252411)
chr8 (19-98)||(19325516-19325595)
[»] chr6 (1 HSPs)
chr6 (19-108)||(34325512-34325601)
[»] chr5 (1 HSPs)
chr5 (19-108)||(4802380-4802469)
[»] chr1 (1 HSPs)
chr1 (19-108)||(47388272-47388361)


Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 33652480 - 33652258
Alignment:
Q  19 tctcacacattataagaataagatcatgtggattggaattgctatcatactaaggaaggataccaagtataatacattttccatgttttgttgtattgta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33652480 tctcacacattataagaataagatcatgtggattggaattgctatcatactaaggaaggataccaagtataatacattttccatgttttgttgtattgta 33652381  T
Q  119 aatcatattgaaagttgtgatgtttgctttcatgttgatattctttcacaatgttcaaggtagtgtctgtgagtagtaattttggaattgtgttttgcat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33652380 aatcatattgaaagttgtgatgtttgctttcatgttgatattctttcacaatgttcaaggtagtgtctgtgagtagtaattttggaattgtgttttgcat 33652281  T
Q  219 caatgagtttattttttatccat 241  Q
    |||||||||||||||||||||||    
T  33652280 caatgagtttattttttatccat 33652258  T

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Target: chr2; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 30922268 - 30922179
Alignment:
Q  19 tctcacacattataagaataagatcatgtggattggaattgctatcatactaaggaaggataccaagtataatacattttccatgttttg 108  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30922268 tctcacaccttataagaataagaccatgtggattggaattgctatcatactaaggaaggataccaagtataatacattttccatgttttg 30922179  T

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Target: chr7 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 42922394 - 42922483
Alignment:
Q  19 tctcacacattataagaataagatcatgtggattggaattgctatcatactaaggaaggataccaagtataatacattttccatgttttg 108  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42922394 tctcacaccttataagaataagaccatgtggattggaattgctatcatactaaggaaggataccaagtataatacattttccatgttttg 42922483  T

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Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 3753514 - 3753603
Alignment:
Q  19 tctcacacattataagaataagatcatgtggattggaattgctatcatactaaggaaggataccaagtataatacattttccatgttttg 108  Q
    |||||||| |||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3753514 tctcacaccttataacaatatgaccatgtggattggaattgctatcatactaaggaaggataccaagtataatacattttccatgttttg 3753603  T

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Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 45287598 - 45287511
Alignment:
Q  20 ctcacacattataagaataagatcatgtggattggaattgctatcatactaaggaaggataccaagtataatacattttccatgtttt 107  Q
    ||||||| |||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  45287598 ctcacaccttataagaataagaccatgtggattgaaattgctatcatattaaggaaggataccaagtataacacattttccatgtttt 45287511  T

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Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 19252332 - 19252411
Alignment:
Q  19 tctcacacattataagaataagatcatgtggattggaattgctatcatactaaggaaggataccaagtataatacatttt 98  Q
    |||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  19252332 tctcacaccttataacaataagaccatgtggattggaattgctatcatactaaggaaggataccaagcataatacatttt 19252411  T

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Target: chr8; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 19325516 - 19325595
Alignment:
Q  19 tctcacacattataagaataagatcatgtggattggaattgctatcatactaaggaaggataccaagtataatacatttt 98  Q
    |||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  19325516 tctcacaccttataacaataagaccatgtggattggaattgctatcatactaaggaaggataccaagcataatacatttt 19325595  T

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Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 34325512 - 34325601
Alignment:
Q  19 tctcacacattataagaataagatcatgtggattggaattgctatcatactaaggaaggataccaagtataatacattttccatgttttg 108  Q
    ||||| || |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  34325512 tctcataccttataagaataagaccatgtggattggaattgctatcatactaaggaaagataccaagtataatacattttccatgttttg 34325601  T

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Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 4802469 - 4802380
Alignment:
Q  19 tctcacacattataagaataagatcatgtggattggaattgctatcatactaaggaaggataccaagtataatacattttccatgttttg 108  Q
    |||||||| |||||||||||||| ||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  4802469 tctcacaccttataagaataagaccatgtggattgaaattgctatcatatcaaggaaggataccaagtataatacattttccatgttttg 4802380  T

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Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 47388361 - 47388272
Alignment:
Q  19 tctcacacattataagaataagatcatgtggattggaattgctatcatactaaggaaggataccaagtataatacattttccatgttttg 108  Q
    |||||||| |||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  47388361 tctcacaccttataagaataagaccatgtggattgaaattgctatcatactaaagaaggataccaagtatattacattttccatgttttg 47388272  T

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