View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10705_low_11 (Length: 229)
Name: NF10705_low_11
Description: NF10705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10705_low_11 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 2357163 - 2356941
Alignment:
| Q |
7 |
gttagaaatcatcaaatcaacaaagtcatttcaattcatttgtaagaatccacatttaatttgatcgttgcttcaaaattgccaattagcgaaaaagcca |
106 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2357163 |
gttagacatcatcaaatcaacaaagtcatttcaattcatttgtaagaatccacatttaatttgatcgttgcttcaaaattgccaattagcgaaaaagcca |
2357064 |
T |
|
| Q |
107 |
aaatccaaatgcaattcacataaggctgttcaaattcatgagtagcactaataatagagggttggcaaaatgggtttttagtgtcaaaatgttaggtgnn |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2357063 |
aaatccaaatgcaattcacataaggctgttcaaattcatgagtagcactaataatagagggttggcaaaatgggtttttagtgtcaaaatgttaggtgaa |
2356964 |
T |
|
| Q |
207 |
nnnnnttatatatcaaagtttaa |
229 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
2356963 |
aaaaattatatatcaaagtttaa |
2356941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University